Variant report

Variant	rs140917121
Chromosome Location	chrX:77810943-77810944
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chrX:77810930-77811223	K562	blood:	n/a	chrX:77811073-77811094
2	CTCF	chrX:77810880-77811030	NHDF-neo	bronchial:	n/a	n/a
3	ZNF143	chrX:77810920-77811233	GM12878	blood:	n/a	n/a
4	CTCF	chrX:77810940-77811090	HA-sp	spinal cord:	n/a	n/a
5	CTCF	chrX:77810705-77811423	A549	lung:	n/a	chrX:77811073-77811094
6	CTCF	chrX:77810840-77810990	HAc	cerebellar:	n/a	n/a
7	SMC3	chrX:77810731-77811414	SK-N-SH	brain:	n/a	n/a
8	CTCF	chrX:77810871-77811289	IMR90	lung:	n/a	chrX:77811073-77811094
9	RAD21	chrX:77810888-77811220	GM12878	blood:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
10	CTCF	chrX:77810940-77811090	HRE	kidney:	n/a	n/a
11	CTCF	chrX:77810920-77811070	HCM	heart:	n/a	n/a
12	CTCF	chrX:77810922-77811201	Spleen_OC	spleen:	n/a	chrX:77811073-77811094
13	CTCF	chrX:77810900-77811050	BE2_C	brain:	n/a	n/a
14	CTCF	chrX:77810860-77811010	NHLF	lung:	n/a	n/a
15	RAD21	chrX:77810843-77811352	A549	lung:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
16	RAD21	chrX:77810798-77811389	MCF-7	breast:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
17	MYC	chrX:77810942-77811035	MCF10A-Er-Src	breast:	n/a	n/a
18	RAD21	chrX:77810898-77811317	Hela-S3	cervix:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
19	CTCF	chrX:77810900-77811050	RPTEC	kidney:	n/a	n/a
20	CTCF	chrX:77810930-77811129	SK-N-SH_RA	brain:	n/a	chrX:77811073-77811094
21	RAD21	chrX:77810936-77811267	HepG2	liver:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
22	CTCF	chrX:77810940-77811090	GM12872	blood:	n/a	n/a
23	RAD21	chrX:77810864-77811316	IMR90	lung:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
24	CTCF	chrX:77810940-77811090	GM12878	blood:	n/a	n/a
25	RAD21	chrX:77810902-77811342	MCF-7	breast:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
26	CTCF	chrX:77810900-77811050	AG04450	lung:	n/a	n/a
27	RAD21	chrX:77810843-77811255	HepG2	liver:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
28	MXI1	chrX:77810889-77811068	GM12878	blood:	n/a	n/a
29	RAD21	chrX:77810930-77811203	H1-hESC	embryonic stem cell:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
30	RUNX3	chrX:77810850-77811222	GM12878	blood:	n/a	n/a
31	TBL1XR1	chrX:77810822-77811004	GM12878	blood:	n/a	n/a
32	CTCF	chrX:77810940-77811090	HBMEC	blood vessel:	n/a	n/a
33	RAD21	chrX:77810867-77811243	SK-N-SH_RA	brain:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
34	CTCF	chrX:77810854-77811401	GM12878	blood:	n/a	chrX:77811073-77811094
35	RAD21	chrX:77810886-77811144	SK-N-SH_RA	brain:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
36	RAD21	chrX:77810877-77811266	GM12878	blood:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
37	CTCF	chrX:77810624-77811402	SK-N-SH	brain:	n/a	chrX:77811073-77811094
38	RAD21	chrX:77810941-77811258	H1-hESC	embryonic stem cell:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
39	SMC3	chrX:77810828-77812055	GM12878	blood:	n/a	n/a
40	RAD21	chrX:77810884-77811321	ECC-1	luminal epithelium:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
41	CTCF	chrX:77810922-77811156	A549	lung:	n/a	chrX:77811073-77811094
42	CTCF	chrX:77810920-77811070	HMEC	breast:	n/a	n/a
43	CTCF	chrX:77810940-77811090	A549	lung:	n/a	n/a
44	CTCF	chrX:77810920-77811070	HAc	cerebellar:	n/a	n/a
45	RAD21	chrX:77810870-77811330	A549	lung:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
46	POLR2A	chrX:77810890-77811558	SK-N-MC	brain:	n/a	n/a
47	RAD21	chrX:77810836-77811476	GM12878	blood:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
48	SMC3	chrX:77810915-77811279	Hela-S3	cervix:	n/a	n/a
49	RAD21	chrX:77810707-77811434	SK-N-SH	brain:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
50	CTCF	chrX:77810880-77811030	GM06990	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:77810818..77811621-chrX:78337177..78337725,3	MCF-7	breast:
2	chrX:77810661..77811278-chrX:78780189..78780762,2	MCF-7	breast:

Variant related genes	Relation type
UBE2V1P7	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529299	chrX:77040316-77947157	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv521599	chrX:77662439-78124078	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv528728	chrX:77662439-78124078	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv510836	chrX:77796010-77825919	Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3410250	chrX:77803856-77860976	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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