Variant report

Variant	rs1409381
Chromosome Location	chr9:116518734-116518735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10759655	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10759656	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981911	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10981912	0.80[ASN][1000 genomes]
rs10981914	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10981915	0.94[CEU][hapmap];0.95[CHB][hapmap]
rs12335674	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12345205	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12346446	0.94[CEU][hapmap];0.95[CHB][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4979281	0.94[CEU][hapmap];0.95[CHB][hapmap]
rs56275553	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7847036	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7866886	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs913081	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116516800-116518800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:116517800-116518800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr9:116518000-116519200	Enhancers	Ovary	ovary
4	chr9:116518200-116521200	Weak transcription	Pancreas	Pancrea
5	chr9:116518400-116518800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:116518400-116519000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr9:116518400-116519200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:116518400-116519200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr9:116518600-116518800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr9:116518600-116518800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr9:116518600-116519000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:116518600-116519200	Enhancers	H9 Cell Line	embryonic stem cell
13	chr9:116518600-116519200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:116518600-116519200	Enhancers	Spleen	Spleen
15	chr9:116518600-116519600	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
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