Variant report

Variant	rs140949939
Chromosome Location	chr3:78730909-78730910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529995	chr3:78188643-78739698	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1008156	chr3:78444137-78765884	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv3413182	chr3:78730462-78737760	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3429631	chr3:78730837-78733085	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78654200-78746600	Weak transcription	NHDF-Ad	bronchial
2	chr3:78667200-78751200	Weak transcription	Esophagus	oesophagus
3	chr3:78679200-78733200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:78679400-78736600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:78694400-78733200	Weak transcription	Fetal Kidney	kidney
6	chr3:78703200-78739200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:78706400-78736200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:78706600-78735200	Weak transcription	Primary T cells from cord blood	blood
9	chr3:78706600-78736400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr3:78707000-78735400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:78716000-78739600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr3:78716600-78733000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:78717600-78733200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:78717600-78739600	Weak transcription	Osteobl	bone
15	chr3:78717800-78736800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:78717800-78745200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr3:78717800-78748400	Weak transcription	Ovary	ovary
18	chr3:78718600-78739200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr3:78719400-78736800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:78719600-78753000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:78720000-78737800	Weak transcription	Fetal Brain Female	brain
22	chr3:78720000-78753200	Weak transcription	Brain Hippocampus Middle	brain
23	chr3:78720200-78731600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr3:78724400-78738200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr3:78724800-78733400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr3:78727200-78738200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:78729200-78732200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr3:78730400-78731000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:78730400-78731200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr3:78730400-78731200	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr3:78730400-78731200	Strong transcription	Fetal Lung	lung
32	chr3:78730400-78731400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr3:78730400-78752600	Weak transcription	Fetal Stomach	stomach
34	chr3:78730600-78731200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr3:78730600-78731200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr3:78730600-78731200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr3:78730600-78731400	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr3:78730600-78731800	Strong transcription	HepG2	liver
39	chr3:78730800-78731200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr3:78730800-78738600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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