Variant report

Variant	rs140958573
Chromosome Location	chr4:165859233-165859234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:148)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:148 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr4:165859180-165859330	GM12865	blood:	n/a	n/a
2	CTCF	chr4:165859200-165859350	HPF	lung:	n/a	n/a
3	CTCF	chr4:165859160-165859310	GM12867	blood:	n/a	n/a
4	CTCF	chr4:165859200-165859350	Hela-S3	cervix:	n/a	n/a
5	CTCF	chr4:165859200-165859350	SAEC	small airway:	n/a	n/a
6	CTCF	chr4:165859200-165859350	NHLF	lung:	n/a	n/a
7	CTCF	chr4:165859081-165859373	H1-hESC	embryonic stem cell:	n/a	n/a
8	RAD21	chr4:165858779-165859480	GM12878	blood:	n/a	n/a
9	CTCF	chr4:165859180-165859330	GM12872	blood:	n/a	n/a
10	CTCF	chr4:165859220-165859370	HEK293	kidney:	n/a	n/a
11	CTCF	chr4:165859200-165859350	BJ	skin:	n/a	n/a
12	CTCF	chr4:165859160-165859310	GM12872	blood:	n/a	n/a
13	ZNF143	chr4:165858810-165859456	GM12878	blood:	n/a	n/a
14	MAFK	chr4:165858725-165859304	H1-hESC	embryonic stem cell:	n/a	n/a
15	YY1	chr4:165859088-165859337	GM12878	blood:	n/a	n/a
16	RAD21	chr4:165859139-165859363	HepG2	liver:	n/a	n/a
17	MAX	chr4:165858846-165859440	GM12878	blood:	n/a	n/a
18	MAZ	chr4:165858846-165859586	GM12878	blood:	n/a	n/a
19	CTCF	chr4:165859183-165859338	NHEK	skin:	n/a	n/a
20	CTCF	chr4:165859200-165859350	HCT-116	colon:	n/a	n/a
21	CTCF	chr4:165859167-165859348	Gliobla	brain:	n/a	n/a
22	CTCF	chr4:165859180-165859330	HCFaa	heart:	n/a	n/a
23	CTCF	chr4:165859174-165859266	Pancreas_OC	pancreas:	n/a	n/a
24	CTCF	chr4:165859140-165859290	GM12875	blood:	n/a	n/a
25	NRF1	chr4:165859035-165859317	GM12878	blood:	n/a	n/a
26	CTCF	chr4:165859140-165859290	NB4	blood:	n/a	n/a
27	CTCF	chr4:165859160-165859310	GM12869	blood:	n/a	n/a
28	CTCF	chr4:165859172-165859337	HepG2	liver:	n/a	n/a
29	CTCF	chr4:165859140-165859290	GM06990	blood:	n/a	n/a
30	CHD2	chr4:165858814-165859380	GM12878	blood:	n/a	n/a
31	CTCF	chr4:165859140-165859290	HFF	foreskin:	n/a	n/a
32	CTCF	chr4:165859147-165859350	H1-hESC	embryonic stem cell:	n/a	n/a
33	CTCF	chr4:165859160-165859310	MCF-7	breast:	n/a	n/a
34	CTCF	chr4:165859100-165859250	HVMF	connective:	n/a	n/a
35	CTCF	chr4:165859100-165859250	A549	lung:	n/a	n/a
36	RAD21	chr4:165859183-165859325	K562	blood:	n/a	n/a
37	CTCF	chr4:165859215-165859333	Hela-S3	cervix:	n/a	n/a
38	CTCF	chr4:165859200-165859350	HRPEpiC	eye:	n/a	n/a
39	CTCF	chr4:165859180-165859330	HPAF	blood vessel:	n/a	n/a
40	CTCF	chr4:165859180-165859330	GM12875	blood:	n/a	n/a
41	CTCF	chr4:165859122-165859376	GM19240	blood:	n/a	n/a
42	SMC3	chr4:165858935-165859354	K562	blood:	n/a	n/a
43	CTCF	chr4:165859216-165859294	SK-N-SH_RA	brain:	n/a	n/a
44	WRNIP1	chr4:165858753-165860017	GM12878	blood:	n/a	n/a
45	CTCF	chr4:165859140-165859290	GM12866	blood:	n/a	n/a
46	CTCF	chr4:165858815-165859415	K562	blood:	n/a	n/a
47	CTCF	chr4:165859100-165859250	BE2_C	brain:	n/a	n/a
48	CTCF	chr4:165859185-165859288	LNCaP	prostate:	n/a	n/a
49	CTCF	chr4:165859200-165859350	K562	blood:	n/a	n/a
50	CTCF	chr4:165859150-165859348	MCF-7	breast:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000270960	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461821	chr4:165402309-165859951	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv596037	chr4:165402309-165859951	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1019150	chr4:165505585-165907924	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv1026152	chr4:165622244-166027447	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv537336	chr4:165622244-166027447	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv880382	chr4:165793001-165964290	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
9	esv2757965	chr4:165801816-165976350	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
10	esv2759299	chr4:165801816-165976350	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
11	nsv528686	chr4:165814359-165930168	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv967697	chr4:165843736-165889668	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv1015970	chr4:165852926-165973078	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
14	nsv1021905	chr4:165852926-166212878	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
15	nsv830140	chr4:165855999-165956612	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
16	nsv822815	chr4:165858272-165862356	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:165857400-165859400	Flanking Active TSS	GM12878-XiMat	blood
2	chr4:165858600-165859400	Enhancers	Fetal Muscle Leg	muscle
3	chr4:165859000-165860000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:165859200-165864400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:165859200-165869200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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