Variant report

Variant	rs1409862
Chromosome Location	chr20:11032806-11032807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11908350	1.00[AMR][1000 genomes]
rs1887321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34622744	1.00[AMR][1000 genomes]
rs57881506	1.00[AMR][1000 genomes]
rs58202762	1.00[AMR][1000 genomes]
rs59430901	1.00[AMR][1000 genomes]
rs59648044	1.00[AMR][1000 genomes]
rs59902863	1.00[AMR][1000 genomes]
rs59959156	1.00[AMR][1000 genomes]
rs60847066	1.00[AMR][1000 genomes]
rs61510383	1.00[AMR][1000 genomes]
rs73896413	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758513	chr20:10892138-11116725	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2758781	chr20:10892138-11116725	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv521990	chr20:11018626-11037154	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11031600-11036200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr20:11031800-11033600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr20:11032200-11038200	Weak transcription	Adipose Nuclei	Adipose
4	chr20:11032800-11033400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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