Variant report

Variant	rs1410111
Chromosome Location	chr13:51033556-51033557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10492411	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1149867	1.00[CEU][hapmap]
rs1149868	1.00[CEU][hapmap]
rs1160037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17074281	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17074284	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17074360	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17074368	1.00[AFR][1000 genomes]
rs17074374	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17074379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17074391	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2740532	1.00[CEU][hapmap]
rs74076623	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs887393	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832609	chr13:50946577-51065968	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1045237	chr13:50976560-51102386	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51022600-51034200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:51030600-51050000	Weak transcription	Fetal Lung	lung
3	chr13:51030800-51040600	Weak transcription	Fetal Stomach	stomach
4	chr13:51032000-51033800	Weak transcription	NHDF-Ad	bronchial
5	chr13:51032000-51034800	Weak transcription	Primary B cells from cord blood	blood
6	chr13:51032000-51034800	Enhancers	Fetal Heart	heart
7	chr13:51032200-51033800	Weak transcription	Psoas Muscle	Psoas
8	chr13:51032400-51033600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:51032800-51033600	Enhancers	HSMMtube	muscle
10	chr13:51033000-51034200	Enhancers	K562	blood
11	chr13:51033200-51033600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr13:51033200-51033800	Enhancers	Right Ventricle	heart
13	chr13:51033200-51034800	Enhancers	Left Ventricle	heart
14	chr13:51033400-51034800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr13:51033400-51034800	Enhancers	Right Atrium	heart
16	chr13:51033400-51035400	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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