Variant report

Variant	rs1410646
Chromosome Location	chr13:98066314-98066315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:98047283..98049852-chr13:98064242..98066608,2	K562	blood:
2	chr13:98064161..98066633-chr13:98085870..98087529,2	K562	blood:

Variant related genes	Relation type
ENSG00000125249	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11843522	0.83[YRI][hapmap]
rs4771996	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9516926	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98065200-98074800	Weak transcription	NHDF-Ad	bronchial
2	chr13:98065600-98066400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr13:98065600-98066400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr13:98065800-98067600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:98066000-98066400	Enhancers	Primary hematopoietic stem cells	blood
6	chr13:98066000-98066400	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr13:98066000-98066800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr13:98066000-98067000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:98066000-98067400	Enhancers	Brain Angular Gyrus	brain
10	chr13:98066000-98067400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr13:98066000-98067600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr13:98066000-98067600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr13:98066200-98066400	Enhancers	Brain Anterior Caudate	brain
14	chr13:98066200-98066600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr13:98066200-98066600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr13:98066200-98066600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr13:98066200-98066600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr13:98066200-98066600	Enhancers	Brain Cingulate Gyrus	brain
19	chr13:98066200-98066600	Enhancers	Duodenum Mucosa	Duodenum
20	chr13:98066200-98066800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr13:98066200-98066800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr13:98066200-98066800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr13:98066200-98066800	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr13:98066200-98066800	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr13:98066200-98066800	Enhancers	Small Intestine	intestine

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