Variant report

Variant	rs141109053
Chromosome Location	chr6:39022824-39022825
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:39014785..39017346-chr6:39021538..39023370,2	K562	blood:
2	chr6:39016643..39019473-chr6:39022041..39023583,2	K562	blood:

Variant related genes	Relation type
ENSG00000112164	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv885821	chr6:38843970-39039503	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv948357	chr6:38920998-39035836	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1027064	chr6:38984374-39034516	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1801734	chr6:38986164-39034484	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv528286	chr6:39019503-39060478	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv470815	chr6:39022698-39051694	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39017200-39030200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:39017800-39026400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:39018800-39023400	Enhancers	Pancreas	Pancrea
4	chr6:39019600-39023600	Weak transcription	Right Atrium	heart
5	chr6:39019800-39023800	Weak transcription	Right Ventricle	heart
6	chr6:39020000-39024000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:39020400-39025000	Weak transcription	Dnd41	blood
8	chr6:39020800-39023000	Enhancers	Fetal Intestine Large	intestine
9	chr6:39020800-39023800	Enhancers	Fetal Heart	heart
10	chr6:39021000-39023000	Enhancers	Duodenum Mucosa	Duodenum
11	chr6:39021000-39023000	Enhancers	Fetal Intestine Small	intestine
12	chr6:39021200-39072000	Weak transcription	Gastric	stomach
13	chr6:39021800-39023000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:39022200-39023200	Enhancers	Left Ventricle	heart
15	chr6:39022400-39023600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:39022400-39025600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:39022400-39026000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:39022400-39028000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:39022400-39028600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:39022400-39041600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:39022600-39024000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:39022800-39023000	Enhancers	Fetal Lung	lung
23	chr6:39022800-39023200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr6:39022800-39025600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr6:39022800-39026800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links