Variant report

Variant	rs141110989
Chromosome Location	chr5:17343873-17343874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr5:17343798-17344102	MCF10A-Er-Src	breast:	n/a	n/a
2	KAP1	chr5:17343727-17344393	U2OS	brain:	n/a	chr5:17343998-17344007
3	POLR2A	chr5:17343738-17344222	PANC-1	pancreas:	n/a	n/a
4	FOS	chr5:17343793-17344196	MCF10A-Er-Src	breast:	n/a	chr5:17343998-17344009 chr5:17343999-17344008 chr5:17344000-17344009 chr5:17344001-17344012 chr5:17344000-17344007 chr5:17343998-17344010 chr5:17343999-17344009
5	JUN	chr5:17343692-17344341	K562	blood:	n/a	chr5:17343999-17344008 chr5:17344000-17344009 chr5:17344001-17344012 chr5:17344000-17344007 chr5:17343998-17344010 chr5:17343999-17344009
6	FOS	chr5:17343793-17344194	MCF10A-Er-Src	breast:	n/a	chr5:17343998-17344009 chr5:17343999-17344008 chr5:17344000-17344009 chr5:17344001-17344012 chr5:17344000-17344007 chr5:17343998-17344010 chr5:17343999-17344009
7	BRCA1	chr5:17343823-17344125	Hela-S3	cervix:	n/a	n/a
8	SP1	chr5:17343669-17344424	A549	lung:	n/a	n/a
9	SP1	chr5:17343709-17344381	A549	lung:	n/a	n/a
10	RFX5	chr5:17343786-17344207	Hela-S3	cervix:	n/a	n/a
11	JUN	chr5:17343830-17344204	K562	blood:	n/a	chr5:17343999-17344008 chr5:17344000-17344009 chr5:17344001-17344012 chr5:17344000-17344007 chr5:17343998-17344010 chr5:17343999-17344009
12	ATF2	chr5:17343703-17344196	GM12878	blood:	n/a	n/a
13	ZNF384	chr5:17343822-17344211	GM12878	blood:	n/a	chr5:17344027-17344035
14	TFAP2C	chr5:17343709-17344234	Hela-S3	cervix:	n/a	chr5:17344008-17344023
15	BATF	chr5:17343783-17344161	GM12878	blood:	n/a	chr5:17343996-17344007
16	CHD2	chr5:17343791-17344150	GM12878	blood:	n/a	n/a
17	HDAC2	chr5:17343809-17344279	MCF-7	breast:	n/a	chr5:17343980-17343989
18	USF2	chr5:17343846-17344221	Hela-S3	cervix:	n/a	n/a
19	BHLHE40	chr5:17343829-17344187	GM12878	blood:	n/a	n/a
20	FOS	chr5:17343773-17344163	Hela-S3	cervix:	n/a	chr5:17343998-17344009 chr5:17343999-17344008 chr5:17344000-17344009 chr5:17344001-17344012 chr5:17344000-17344007 chr5:17343998-17344010 chr5:17343999-17344009
21	STAT3	chr5:17343864-17344055	MCF10A-Er-Src	breast:	n/a	chr5:17343999-17344008
22	JUN	chr5:17343736-17344236	Hela-S3	cervix:	n/a	chr5:17343999-17344008 chr5:17344000-17344009 chr5:17344001-17344012 chr5:17344000-17344007 chr5:17343998-17344010 chr5:17343999-17344009
23	JUND	chr5:17343839-17344120	HepG2	liver:	n/a	chr5:17343999-17344008 chr5:17344000-17344009 chr5:17344001-17344012 chr5:17344000-17344007 chr5:17343998-17344010 chr5:17343999-17344009 chr5:17343998-17344009
24	FOS	chr5:17343822-17344194	MCF10A-Er-Src	breast:	n/a	chr5:17343998-17344009 chr5:17343999-17344008 chr5:17344000-17344009 chr5:17344001-17344012 chr5:17344000-17344007 chr5:17343998-17344010 chr5:17343999-17344009
25	FOXA2	chr5:17343780-17344255	A549	lung:	n/a	chr5:17343977-17343989
26	MAX	chr5:17343770-17344266	Hela-S3	cervix:	n/a	n/a
27	FOS	chr5:17343812-17344193	MCF10A-Er-Src	breast:	n/a	chr5:17343998-17344009 chr5:17343999-17344008 chr5:17344000-17344009 chr5:17344001-17344012 chr5:17344000-17344007 chr5:17343998-17344010 chr5:17343999-17344009
28	PRDM1	chr5:17343822-17344159	Hela-S3	cervix:	n/a	chr5:17343999-17344008 chr5:17344000-17344009 chr5:17343983-17343997
29	MAX	chr5:17343616-17344536	A549	lung:	n/a	n/a
30	JUN	chr5:17343813-17344165	HUVEC	blood vessel:	n/a	chr5:17343999-17344008 chr5:17344000-17344009 chr5:17344001-17344012 chr5:17344000-17344007 chr5:17343998-17344010 chr5:17343999-17344009
31	FOSL2	chr5:17343721-17344206	MCF-7	breast:	n/a	chr5:17343997-17344008 chr5:17343999-17344008 chr5:17344000-17344009 chr5:17344001-17344012 chr5:17344000-17344007 chr5:17343998-17344010 chr5:17343999-17344009
32	CTCF	chr5:17343840-17343990	NHDF-neo	bronchial:	n/a	n/a
33	MAFK	chr5:17343787-17344443	Hela-S3	cervix:	n/a	chr5:17343998-17344007
34	STAT1	chr5:17343802-17344120	GM12878	blood:	n/a	chr5:17343999-17344008
35	EP300	chr5:17343817-17344155	GM12878	blood:	n/a	chr5:17344000-17344009 chr5:17343980-17343990
36	EP300	chr5:17343602-17344519	A549	lung:	n/a	chr5:17344000-17344009 chr5:17343980-17343990
37	EBF1	chr5:17343794-17344241	GM12878	blood:	n/a	chr5:17344013-17344022 chr5:17344011-17344024 chr5:17344013-17344022 chr5:17344012-17344022 chr5:17344011-17344022
38	JUND	chr5:17343817-17344209	K562	blood:	n/a	chr5:17343999-17344008 chr5:17344000-17344009 chr5:17344001-17344012 chr5:17344000-17344007 chr5:17343998-17344010 chr5:17343999-17344009 chr5:17343998-17344009
39	FOXA2	chr5:17343725-17344265	A549	lung:	n/a	chr5:17343977-17343989
40	STAT3	chr5:17343814-17344122	MCF10A-Er-Src	breast:	n/a	chr5:17343999-17344008
41	ZNF143	chr5:17343790-17344191	GM12878	blood:	n/a	n/a
42	FOSL1	chr5:17343773-17344170	HCT-116	colon:	n/a	chr5:17343999-17344008 chr5:17344000-17344009 chr5:17344001-17344012 chr5:17344000-17344007 chr5:17343998-17344010 chr5:17343999-17344009
43	TFAP2A	chr5:17343774-17344209	Hela-S3	cervix:	n/a	chr5:17343999-17344008
44	BATF	chr5:17343760-17344168	GM12878	blood:	n/a	chr5:17343996-17344007
45	YY1	chr5:17343859-17344138	A549	lung:	n/a	n/a
46	FOSL2	chr5:17343683-17344285	MCF-7	breast:	n/a	chr5:17343997-17344008 chr5:17343999-17344008 chr5:17344000-17344009 chr5:17344001-17344012 chr5:17344000-17344007 chr5:17343998-17344010 chr5:17343999-17344009
47	MAX	chr5:17343804-17344279	Hela-S3	cervix:	n/a	n/a
48	RCOR1	chr5:17343803-17344247	GM12878	blood:	n/a	n/a
49	WRNIP1	chr5:17343766-17344245	GM12878	blood:	n/a	n/a
50	RCOR1	chr5:17343750-17344225	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
RN7SKP133	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029959	chr5:17133214-17455995	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv461988	chr5:17296342-17484038	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv597313	chr5:17296342-17484038	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv830219	chr5:17325802-17518914	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	esv2763872	chr5:17342482-17358269	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
6	esv3432739	chr5:17342737-17357177	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
7	esv19164	chr5:17342748-17357008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:17343400-17344000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:17343400-17344400	Enhancers	Primary B cells from peripheral blood	blood
3	chr5:17343600-17344000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:17343600-17344000	Flanking Active TSS	GM12878-XiMat	blood
5	chr5:17343600-17344000	Enhancers	NHDF-Ad	bronchial
6	chr5:17343600-17344200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:17343600-17344200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:17343600-17344200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr5:17343600-17344200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:17343600-17344200	Enhancers	Ovary	ovary
11	chr5:17343600-17344200	Enhancers	HMEC	breast
12	chr5:17343600-17344200	Enhancers	NHEK	skin
13	chr5:17343600-17344200	Enhancers	NHLF	lung
14	chr5:17343600-17344400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:17343600-17344400	Enhancers	Stomach Mucosa	stomach
16	chr5:17343600-17344400	Flanking Active TSS	A549	lung
17	chr5:17343600-17344400	Enhancers	HUVEC	blood vessel
18	chr5:17343600-17344400	Enhancers	Osteobl	bone
19	chr5:17343600-17344800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr5:17343800-17344000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:17343800-17344000	Enhancers	Aorta	Aorta
22	chr5:17343800-17344200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr5:17343800-17344200	Enhancers	H9 Cell Line	embryonic stem cell
24	chr5:17343800-17344200	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr5:17343800-17344200	Enhancers	Fetal Lung	lung
26	chr5:17343800-17344200	Enhancers	Gastric	stomach
27	chr5:17343800-17344200	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr5:17343800-17344200	Enhancers	NH-A	brain
29	chr5:17343800-17344400	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr5:17343800-17344400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:17343800-17344400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr5:17343800-17344400	Enhancers	Placenta	Placenta
33	chr5:17343800-17344400	Flanking Active TSS	Hela-S3	cervix
34	chr5:17343800-17344800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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