Variant report

Variant	rs141130335
Chromosome Location	chr9:95570710-95570711
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:61)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SUZ12	chr9:95569398-95572352	NT2-D1	testis:	n/a	n/a
2	TCF3	chr9:95570703-95570874	GM12878	blood:	n/a	n/a
3	CTCF	chr9:95570680-95570830	GM06990	blood:	n/a	n/a
4	PAX5	chr9:95570700-95570947	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:95570676-95570726	NT2-D1	testis:	n/a
2	chr9:95570676-95570726	RPTEC	kidney:	n/a
3	chr9:95570676-95570726	ovcar-3	ovarian:	n/a
4	chr9:95570676-95570726	HPAEpiC	pulmonary alveolar:	n/a
5	chr9:95570676-95570726	AoSMC	blood vessel:	n/a
6	chr9:95570676-95570726	HRCEpiC	kidney:	n/a
7	chr9:95570676-95570726	SKMC	muscle:	n/a
8	chr9:95570676-95570726	HEEpiC	esophagus:	n/a
9	chr9:95570676-95570726	HCM	heart:	n/a
10	chr9:95570676-95570726	H1-hESC	embryonic stem cell:	embryo
11	chr9:95570676-95570726	NH-A	brain:	n/a
12	chr9:95570676-95570726	GM12891	blood:	n/a
13	chr9:95570676-95570726	HRE	kidney:	n/a
14	chr9:95570676-95570726	HCPEpiC	choroid plexus:	n/a
15	chr9:95570676-95570726	HUVEC	blood vessel:	n/a
16	chr9:95570676-95570726	AG04450	lung:	fetal
17	chr9:95570676-95570726	A549	lung:	n/a
18	chr9:95570676-95570726	PFSK-1	brain:	n/a
19	chr9:95570676-95570726	SAEC	small airway:	n/a
20	chr9:95570676-95570726	HIPEpiC	eye:	n/a
21	chr9:95570676-95570726	NB4	blood:	n/a
22	chr9:95570676-95570726	HepG2	liver:	n/a
23	chr9:95570676-95570726	ProgFib	skin:	n/a
24	chr9:95570676-95570726	U87	brain:	n/a
25	chr9:95570676-95570726	CMK	blood:	n/a
26	chr9:95570676-95570726	K562	blood:	n/a
27	chr9:95570676-95570726	MCF-7	breast:	n/a
28	chr9:95570676-95570726	GM06990	blood:	n/a
29	chr9:95570676-95570726	SK-N-SH	brain:	n/a
30	chr9:95570676-95570726	HMEC	breast:	n/a
31	chr9:95570676-95570726	PrEC	prostate:	n/a
32	chr9:95570676-95570726	Caco-2	colon:	n/a
33	chr9:95570676-95570726	T-47D	breast:	n/a
34	chr9:95570676-95570726	Jurkat	blood:	n/a
35	chr9:95570676-95570726	AG04449	skin:	fetal
36	chr9:95570676-95570726	HEK293	kidney:	embryo
37	chr9:95570676-95570726	SK-N-SH_RA	brain:	n/a
38	chr9:95570676-95570726	HRPEpiC	eye:	n/a
39	chr9:95570676-95570726	BJ	skin:	n/a
40	chr9:95570676-95570726	AG10803	skin:	n/a
41	chr9:95570676-95570726	BE2_C	brain:	n/a
42	chr9:95570676-95570726	GM12878	blood:	n/a
43	chr9:95570676-95570726	LNCaP	prostate:	n/a
44	chr9:95570676-95570726	Hela-S3	cervix:	n/a
45	chr9:95570676-95570726	NHBE	bronchial:	n/a
46	chr9:95570676-95570726	IMR90	lung:	fetal
47	chr9:95570676-95570726	HCF	heart:	n/a
48	chr9:95570676-95570726	NHDF-neo	bronchial:	n/a
49	chr9:95570676-95570726	AG09309	skin:	n/a
50	chr9:95570676-95570726	GM19239	blood:	n/a

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95570373..95571952-chr9:95637590..95640500,2	MCF-7	breast:
2	chr9:95431083..95433127-chr9:95569211..95571144,2	MCF-7	breast:
3	chr9:95570706..95571359-chr9:95719247..95719879,2	MCF-7	breast:
4	chr9:95431331..95434473-chr9:95569877..95572688,3	MCF-7	breast:

No data

Variant related genes	Relation type
ANKRD19P	TF binding region
ANKRD19P	CpG island
ENSG00000127080	Chromatin interaction
ENSG00000127081	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv972420	chr9:95566045-95588965	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3373736	chr9:95569656-95572504	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95569200-95571200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
2	chr9:95569400-95571400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
3	chr9:95569400-95571600	Bivalent Enhancer	Fetal Muscle Leg	muscle
4	chr9:95569400-95572400	Bivalent Enhancer	Fetal Brain Male	brain
5	chr9:95569400-95572400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr9:95569400-95572400	Bivalent Enhancer	Fetal Thymus	thymus
7	chr9:95569600-95570800	Bivalent Enhancer	Adipose Nuclei	Adipose
8	chr9:95569600-95570800	Enhancers	Right Atrium	heart
9	chr9:95569600-95571000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:95569600-95571200	Enhancers	Pancreas	Pancrea
11	chr9:95569600-95571400	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
12	chr9:95569600-95572200	Bivalent Enhancer	Fetal Stomach	stomach
13	chr9:95569600-95572400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
14	chr9:95569600-95572400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
15	chr9:95569600-95572400	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr9:95569600-95572400	Flanking Active TSS	Right Ventricle	heart
17	chr9:95569600-95572600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
18	chr9:95569800-95570800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
19	chr9:95569800-95571000	Enhancers	Lung	lung
20	chr9:95569800-95571200	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
21	chr9:95569800-95571200	Enhancers	Gastric	stomach
22	chr9:95569800-95571600	Bivalent Enhancer	Placenta	Placenta
23	chr9:95569800-95572200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
24	chr9:95569800-95572400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:95569800-95572400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
26	chr9:95570000-95570800	Bivalent Enhancer	Aorta	Aorta
27	chr9:95570000-95570800	Active TSS	Brain Anterior Caudate	brain
28	chr9:95570000-95570800	Bivalent Enhancer	Esophagus	oesophagus
29	chr9:95570000-95570800	Bivalent Enhancer	Rectal Smooth Muscle	rectum
30	chr9:95570000-95571000	Bivalent Enhancer	Ovary	ovary
31	chr9:95570000-95571000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
32	chr9:95570000-95571800	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
33	chr9:95570000-95571800	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
34	chr9:95570000-95571800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
35	chr9:95570000-95572000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
36	chr9:95570000-95572200	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
37	chr9:95570000-95572400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
38	chr9:95570000-95572400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
39	chr9:95570000-95572400	Bivalent Enhancer	Liver	Liver
40	chr9:95570000-95572600	Bivalent Enhancer	Stomach Mucosa	stomach
41	chr9:95570200-95571000	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
42	chr9:95570200-95571000	Bivalent Enhancer	Spleen	Spleen
43	chr9:95570200-95571200	Enhancers	Primary hematopoietic stem cells	blood
44	chr9:95570200-95571200	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
45	chr9:95570200-95571200	Bivalent Enhancer	NH-A	brain
46	chr9:95570200-95571600	Bivalent/Poised TSS	A549	lung
47	chr9:95570200-95572000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr9:95570200-95572400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
49	chr9:95570200-95572400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
50	chr9:95570400-95570800	Bivalent/Poised TSS	Colonic Mucosa	Colon

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