Variant report

Variant	rs141257560
Chromosome Location	chr1:213407162-213407163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:213405078..213407428-chr1:213458002..213459532,2	K562	blood:
2	chr1:213404542..213407236-chr1:213407336..213409957,4	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392967	chr1:213271844-213490132	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv1012014	chr1:213371127-213423214	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1001201	chr1:213385827-213428021	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv508693	chr1:213406220-213421626	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213326600-213422200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr1:213340600-213424600	Weak transcription	Pancreas	Pancrea
3	chr1:213362200-213415400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr1:213370800-213427600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr1:213372600-213413800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr1:213372800-213414000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr1:213373000-213414200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr1:213373000-213423000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr1:213373200-213417000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr1:213376800-213414200	Weak transcription	Brain Anterior Caudate	brain
11	chr1:213378800-213421200	Weak transcription	Fetal Kidney	kidney
12	chr1:213381600-213425000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:213387400-213414000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr1:213388000-213414400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr1:213388000-213424600	Weak transcription	Gastric	stomach
16	chr1:213388200-213414000	Weak transcription	Aorta	Aorta
17	chr1:213388200-213414000	Weak transcription	Liver	Liver
18	chr1:213388200-213414200	Weak transcription	Ovary	ovary
19	chr1:213388200-213417200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr1:213388200-213426200	Weak transcription	Lung	lung
21	chr1:213388200-213455400	Weak transcription	Placenta	Placenta
22	chr1:213388400-213407400	Weak transcription	Fetal Stomach	stomach
23	chr1:213388400-213407600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr1:213388400-213414000	Weak transcription	Fetal Muscle Leg	muscle
25	chr1:213388400-213414200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr1:213388400-213414200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr1:213388400-213414200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr1:213388600-213418200	Weak transcription	Fetal Intestine Small	intestine
29	chr1:213391200-213439200	Weak transcription	Primary B cells from cord blood	blood
30	chr1:213394400-213420200	Weak transcription	GM12878-XiMat	blood
31	chr1:213398600-213427200	Weak transcription	Colon Smooth Muscle	Colon
32	chr1:213399600-213418000	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr1:213401200-213447400	Weak transcription	Small Intestine	intestine
34	chr1:213402800-213454800	Weak transcription	Brain Substantia Nigra	brain
35	chr1:213403000-213414400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr1:213403200-213407400	Weak transcription	Fetal Intestine Large	intestine
37	chr1:213403200-213418000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr1:213403400-213414000	Weak transcription	Dnd41	blood
39	chr1:213403400-213414800	Weak transcription	Brain Germinal Matrix	brain
40	chr1:213403600-213408200	Weak transcription	HepG2	liver
41	chr1:213403800-213412200	Weak transcription	Esophagus	oesophagus
42	chr1:213404000-213414000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr1:213404200-213416400	Weak transcription	Fetal Thymus	thymus
44	chr1:213404400-213412200	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr1:213404600-213409000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr1:213404800-213414200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr1:213405000-213408600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr1:213405200-213408000	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr1:213405200-213408200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr1:213405200-213409800	Strong transcription	K562	blood

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