Variant report

Variant	rs141293799
Chromosome Location	chr7:19152566-19152567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HDAC9-2	chr7:19152378-19153891	XLOC_006001
2	lnc-HDAC9-2	chr7:19152378-19153894	ENSG00000232821.1

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv532096	chr7:19094324-19361216	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532097	chr7:19105767-19302951	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538767	chr7:19150355-19163170	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1028132	chr7:19150355-19172107	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv538768	chr7:19150355-19172107	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv538769	chr7:19150920-19160604	Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv538770	chr7:19151576-19159136	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Strong transcription	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	n/a
9	nsv538771	chr7:19151576-19162140	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
10	nsv538772	chr7:19152061-19159275	Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	n/a
11	nsv538773	chr7:19152455-19158088	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	n/a
12	nsv538774	chr7:19152455-19162140	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19148200-19154800	Weak transcription	HSMMtube	muscle
2	chr7:19148400-19155600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:19148600-19152600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:19150800-19153200	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr7:19150800-19157200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:19151200-19153000	Flanking Active TSS	Osteobl	bone
7	chr7:19151400-19155200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:19151600-19152600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
9	chr7:19151600-19152600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:19151600-19152600	Active TSS	Aorta	Aorta
11	chr7:19151600-19152800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
12	chr7:19151600-19153400	Strong transcription	HSMM	muscle
13	chr7:19151800-19152600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:19151800-19152800	Active TSS	Right Atrium	heart
15	chr7:19151800-19153000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:19151800-19158800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:19152000-19152600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
18	chr7:19152000-19152600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
19	chr7:19152000-19152600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:19152000-19152800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
21	chr7:19152200-19152600	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
22	chr7:19152200-19152600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
23	chr7:19152200-19152600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr7:19152200-19152600	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr7:19152200-19152600	Bivalent Enhancer	Brain Anterior Caudate	brain
26	chr7:19152200-19152600	Bivalent Enhancer	Brain Cingulate Gyrus	brain
27	chr7:19152200-19152600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
28	chr7:19152200-19152600	Genic enhancers	NHLF	lung
29	chr7:19152200-19153000	Flanking Active TSS	NH-A	brain
30	chr7:19152200-19155600	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
31	chr7:19152400-19152600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
32	chr7:19152400-19152600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
33	chr7:19152400-19152600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
34	chr7:19152400-19152600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
35	chr7:19152400-19152600	Active TSS	Placenta	Placenta
36	chr7:19152400-19152800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
37	chr7:19152400-19152800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr7:19152400-19152800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr7:19152400-19152800	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr7:19152400-19152800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr7:19152400-19152800	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
42	chr7:19152400-19155400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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