Variant report

Variant	rs1412986
Chromosome Location	chr9:71377966-71377967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10511964	0.87[GIH][hapmap];0.82[EUR][1000 genomes]
rs10869335	0.84[CEU][hapmap]
rs10869442	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs11143607	0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11143636	1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs12350270	0.88[CEU][hapmap];0.82[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.98[LWK][hapmap];0.87[MKK][hapmap];0.90[TSI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1336492	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs2027204	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2152647	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs4504703	0.87[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7035163	1.00[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.94[ASN][1000 genomes]
rs7853795	0.89[ASN][1000 genomes]
rs945573	0.80[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2422258	chr9:71234845-71663340	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1017903	chr9:71276951-71690579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71371200-71384600	Weak transcription	Stomach Mucosa	stomach
2	chr9:71374000-71378000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:71374000-71388800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:71376400-71378200	Enhancers	GM12878-XiMat	blood
5	chr9:71376400-71380400	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr9:71376400-71383000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:71377400-71378200	Enhancers	Primary B cells from cord blood	blood
8	chr9:71377400-71380800	Enhancers	Fetal Heart	heart
9	chr9:71377600-71378800	Enhancers	Primary B cells from peripheral blood	blood
10	chr9:71377800-71378000	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr9:71377800-71378200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr9:71377800-71378200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:71377800-71378600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:71377800-71379000	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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