Variant report

Variant	rs141426105
Chromosome Location	chr3:160555409-160555410
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr3:160555265-160555815	NB4	blood:	n/a	chr3:160555590-160555600
2	MYC	chr3:160555257-160555755	NB4	blood:	n/a	chr3:160555590-160555600

Variant related genes	Relation type
PPM1L	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv32963	chr3:160555238-160603116	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160550200-160558600	Weak transcription	Psoas Muscle	Psoas
2	chr3:160553400-160557800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:160553600-160556400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:160553800-160556600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:160553800-160556800	Enhancers	Dnd41	blood
6	chr3:160554200-160555800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr3:160554200-160556200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:160554200-160556200	Enhancers	Primary T cells from cord blood	blood
9	chr3:160554200-160556800	Enhancers	Primary hematopoietic stem cells	blood
10	chr3:160554400-160556200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:160554600-160555600	Enhancers	Hela-S3	cervix
12	chr3:160554600-160556000	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr3:160555000-160556200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr3:160555200-160555600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:160555200-160555600	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr3:160555200-160555600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr3:160555200-160555600	Enhancers	Stomach Mucosa	stomach
18	chr3:160555200-160556000	Enhancers	Fetal Kidney	kidney
19	chr3:160555200-160556200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:160555400-160555600	Enhancers	Rectal Smooth Muscle	rectum
21	chr3:160555400-160555800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr3:160555400-160556000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr3:160555400-160556000	Enhancers	Rectal Mucosa Donor 29	rectum

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