Variant report

Variant	rs141459383
Chromosome Location	chr1:215041853-215041854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:215041853-215041903	HCF	heart:	n/a
2	chr1:215041853-215041903	NH-A	brain:	n/a
3	chr1:215041853-215041903	MCF-7	breast:	n/a
4	chr1:215041853-215041903	IMR90	lung:	fetal
5	chr1:215041853-215041903	AG09309	skin:	n/a
6	chr1:215041853-215041903	AG04450	lung:	fetal
7	chr1:215041853-215041903	HEEpiC	esophagus:	n/a
8	chr1:215041853-215041903	HRPEpiC	eye:	n/a
9	chr1:215041853-215041903	Jurkat	blood:	n/a
10	chr1:215041853-215041903	HRE	kidney:	n/a
11	chr1:215041853-215041903	HUVEC	blood vessel:	n/a
12	chr1:215041853-215041903	HNPCEpiC	eye:	n/a
13	chr1:215041853-215041903	HepG2	liver:	n/a
14	chr1:215041853-215041903	PFSK-1	brain:	n/a
15	chr1:215041853-215041903	SK-N-MC	brain:	n/a
16	chr1:215041853-215041903	T-47D	breast:	n/a
17	chr1:215041853-215041903	NB4	blood:	n/a
18	chr1:215041853-215041903	RPTEC	kidney:	n/a
19	chr1:215041853-215041903	LNCaP	prostate:	n/a
20	chr1:215041853-215041903	K562	blood:	n/a
21	chr1:215041853-215041903	HPAEpiC	pulmonary alveolar:	n/a
22	chr1:215041853-215041903	H1-hESC	embryonic stem cell:	embryo
23	chr1:215041853-215041903	HRCEpiC	kidney:	n/a
24	chr1:215041853-215041903	GM12878	blood:	n/a
25	chr1:215041853-215041903	Hela-S3	cervix:	n/a
26	chr1:215041853-215041903	ECC-1	luminal epithelium:	n/a
27	chr1:215041853-215041903	PANC-1	pancreas:	n/a
28	chr1:215041853-215041903	AoSMC	blood vessel:	n/a
29	chr1:215041853-215041903	HAEpiC	amniotic membrane:	n/a
30	chr1:215041853-215041903	AG09319	gingival:	n/a
31	chr1:215041853-215041903	HL-60	blood:	n/a
32	chr1:215041853-215041903	HEK293	kidney:	embryo
33	chr1:215041853-215041903	BJ	skin:	n/a
34	chr1:215041853-215041903	A549	lung:	n/a
35	chr1:215041853-215041903	Caco-2	colon:	n/a
36	chr1:215041853-215041903	AG04449	skin:	fetal
37	chr1:215041853-215041903	SAEC	small airway:	n/a
38	chr1:215041853-215041903	U87	brain:	n/a
39	chr1:215041853-215041903	HCT-116	colon:	n/a
40	chr1:215041853-215041903	SKMC	muscle:	n/a
41	chr1:215041853-215041903	GM06990	blood:	n/a
42	chr1:215041853-215041903	GM12891	blood:	n/a
43	chr1:215041853-215041903	ovcar-3	ovarian:	n/a
44	chr1:215041853-215041903	HMEC	breast:	n/a
45	chr1:215041853-215041903	GM12892	blood:	n/a
46	chr1:215041853-215041903	ProgFib	skin:	n/a
47	chr1:215041853-215041903	GM19239	blood:	n/a
48	chr1:215041853-215041903	NHBE	bronchial:	n/a
49	chr1:215041853-215041903	NT2-D1	testis:	n/a
50	chr1:215041853-215041903	SK-N-SH_RA	brain:	n/a

No data

Variant related genes	Relation type
GAPDHP24	CpG island

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873167	chr1:214950361-215116947	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873168	chr1:214962771-215064388	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3425597	chr1:215041279-215044877	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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