Variant report

Variant	rs141476498
Chromosome Location	chr7:106810667-106810668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:106417564..106419367-chr7:106809462..106810979,2	K562	blood:
2	chr7:106682746..106686911-chr7:106807556..106811745,9	K562	blood:
3	chr7:106413235..106416729-chr7:106808294..106812162,5	K562	blood:
4	chr7:106806204..106812770-chr7:106813358..106822449,17	MCF-7	breast:
5	chr7:106808400..106812418-chr7:106824330..106827302,6	K562	blood:
6	chr7:106808413..106811737-chr7:107382761..107387306,8	K562	blood:
7	chr7:106806529..106812770-chr7:107382455..107386610,12	K562	blood:
8	chr7:106297795..106302661-chr7:106807374..106810787,5	K562	blood:
9	chr7:106682031..106689663-chr7:106807150..106811711,11	K562	blood:
10	chr1:203691216..203693456-chr7:106809047..106812033,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000005249	Chromatin interaction
ENSG00000241764	Chromatin interaction
ENSG00000058668	Chromatin interaction
ENSG00000105856	Chromatin interaction
ENSG00000177820	Chromatin interaction
ENSG00000228742	Chromatin interaction
ENSG00000105879	Chromatin interaction
ENSG00000253276	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	esv3355666	chr7:106810341-106812889	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106807000-106811400	Active TSS	NHLF	lung
2	chr7:106807200-106811000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:106807200-106811000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr7:106807400-106811000	Active TSS	A549	lung
5	chr7:106807400-106811200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:106807400-106811200	Active TSS	Fetal Intestine Large	intestine
7	chr7:106807400-106811400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:106807600-106810800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:106807600-106810800	Active TSS	Brain Anterior Caudate	brain
10	chr7:106807600-106810800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
11	chr7:106807600-106810800	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr7:106807600-106810800	Active TSS	Fetal Muscle Leg	muscle
13	chr7:106807600-106810800	Active TSS	Fetal Stomach	stomach
14	chr7:106807600-106810800	Active TSS	Hela-S3	cervix
15	chr7:106807600-106811000	Active TSS	HMEC	breast
16	chr7:106807600-106811200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:106807600-106811200	Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr7:106807600-106811200	Active TSS	Fetal Kidney	kidney
19	chr7:106807600-106811200	Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr7:106807600-106811400	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr7:106807600-106811400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:106807600-106811400	Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr7:106807600-106811400	Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr7:106807600-106811400	Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr7:106807600-106811400	Active TSS	Breast Myoepithelial Primary Cells	Breast
26	chr7:106807600-106811400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:106807600-106811400	Active TSS	NHDF-Ad	bronchial
28	chr7:106807600-106812000	Active TSS	K562	blood
29	chr7:106807800-106810800	Active TSS	Brain Cingulate Gyrus	brain
30	chr7:106807800-106810800	Active TSS	Brain Substantia Nigra	brain
31	chr7:106807800-106810800	Active TSS	Fetal Intestine Small	intestine
32	chr7:106807800-106810800	Active TSS	Placenta Amnion	Placenta Amnion
33	chr7:106807800-106810800	Active TSS	Rectal Smooth Muscle	rectum
34	chr7:106807800-106810800	Active TSS	Skeletal Muscle Male	skeletal muscle
35	chr7:106807800-106810800	Active TSS	HSMM	muscle
36	chr7:106807800-106811000	Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr7:106807800-106811000	Active TSS	Brain Hippocampus Middle	brain
38	chr7:106807800-106811000	Active TSS	Fetal Muscle Trunk	muscle
39	chr7:106807800-106811200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr7:106807800-106811200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr7:106807800-106811200	Active TSS	Aorta	Aorta
42	chr7:106807800-106811200	Active TSS	Colon Smooth Muscle	Colon
43	chr7:106807800-106811200	Active TSS	Right Ventricle	heart
44	chr7:106807800-106811200	Active TSS	Thymus	Thymus
45	chr7:106807800-106811400	Active TSS	H1 Cell Line	embryonic stem cell
46	chr7:106807800-106811400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr7:106807800-106811400	Active TSS	Psoas Muscle	Psoas
48	chr7:106807800-106811400	Active TSS	GM12878-XiMat	blood
49	chr7:106807800-106811400	Active TSS	HSMMtube	muscle
50	chr7:106807800-106811800	Active TSS	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links