Variant report

Variant	rs141477516
Chromosome Location	chr9:97381401-97381402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97377917..97381579-chr9:97382484..97386312,5	MCF-7	breast:
2	chr9:97366331..97367935-chr9:97380870..97383175,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv614918	chr9:97380597-97412037	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97364400-97382800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr9:97364800-97382800	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr9:97366600-97384400	Weak transcription	Small Intestine	intestine
4	chr9:97370000-97382400	Weak transcription	Lung	lung
5	chr9:97371400-97401000	Weak transcription	Spleen	Spleen
6	chr9:97371600-97384200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:97372400-97384400	Weak transcription	Gastric	stomach
8	chr9:97374600-97384400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr9:97374600-97392600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr9:97374600-97393400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr9:97374800-97384200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr9:97375200-97385600	Weak transcription	Stomach Mucosa	stomach
13	chr9:97375400-97382800	Strong transcription	Duodenum Mucosa	Duodenum
14	chr9:97375400-97382800	Strong transcription	Fetal Intestine Large	intestine
15	chr9:97375400-97383000	Strong transcription	Fetal Intestine Small	intestine
16	chr9:97376200-97385800	Strong transcription	Liver	Liver
17	chr9:97380800-97383000	Enhancers	Fetal Lung	lung
18	chr9:97381000-97381600	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr9:97381000-97381800	Enhancers	Fetal Heart	heart
20	chr9:97381000-97381800	Enhancers	Ovary	ovary
21	chr9:97381200-97381600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr9:97381200-97381600	Enhancers	Fetal Stomach	stomach
23	chr9:97381400-97381600	Enhancers	Right Atrium	heart
24	chr9:97381400-97389800	Weak transcription	Pancreas	Pancrea
25	chr9:97381400-97400400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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