Variant report

Variant	rs141484898
Chromosome Location	chr15:41852443-41852444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:41852380-41852530	AG04449	skin:	n/a	n/a
2	TEAD4	chr15:41852150-41852601	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr15:41851238-41852973	K562	blood:	n/a	n/a
4	SIN3A	chr15:41849836-41852455	H1-hESC	embryonic stem cell:	n/a	chr15:41852090-41852104 chr15:41852327-41852340
5	MXI1	chr15:41849704-41852502	IMR90	lung:	n/a	chr15:41851314-41851329
6	MXI1	chr15:41849639-41852553	SK-N-SH	brain:	n/a	chr15:41851314-41851329
7	ZNF263	chr15:41851058-41853318	HEK293-T-REx	kidney:	n/a	chr15:41851388-41851409 chr15:41851348-41851369 chr15:41851896-41851905 chr15:41851160-41851169
8	POLR2A	chr15:41852394-41852453	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr15:41852393-41852655	HepG2	liver:	n/a	n/a
10	TEAD4	chr15:41852157-41852518	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:41851361..41854178-chr15:42065182..42067599,2	K562	blood:
2	chr15:41850304..41852496-chr15:41951450..41954168,2	MCF-7	breast:
3	chr15:41851029..41853126-chr15:41899971..41902269,2	K562	blood:
4	chr15:41849860..41852803-chr15:41858013..41860929,2	MCF-7	breast:
5	chr15:41847317..41853712-chr15:41951201..41955578,8	K562	blood:
6	chr15:41835713..41840265-chr15:41851401..41853463,4	K562	blood:
7	chr15:41849459..41853162-chr15:41854225..41857161,4	MCF-7	breast:
8	chr15:41784400..41789772-chr15:41847283..41854059,7	K562	blood:
9	chr15:41849370..41852913-chr15:41951069..41953769,6	K562	blood:
10	chr15:41850576..41853126-chr15:41900769..41903357,2	K562	blood:

Variant related genes	Relation type
TYRO3	TF binding region
ENSG00000137825	Chromatin interaction
ENSG00000137802	Chromatin interaction
ENSG00000092445	Chromatin interaction
ENSG00000174197	Chromatin interaction
ENSG00000103932	Chromatin interaction
ENSG00000260926	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3379660	chr15:41850410-41852608	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	esv3311131	chr15:41851466-41853360	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	esv3311132	chr15:41851466-41853360	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41850000-41853000	Enhancers	Fetal Heart	heart
2	chr15:41850200-41852600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr15:41850200-41852600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:41850200-41853200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:41850600-41852600	Active TSS	Brain Angular Gyrus	brain
6	chr15:41850800-41852600	Active TSS	H9 Cell Line	embryonic stem cell
7	chr15:41850800-41852600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:41850800-41853000	Active TSS	Fetal Kidney	kidney
9	chr15:41851800-41852600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:41851800-41852600	Flanking Active TSS	Duodenum Mucosa	Duodenum
11	chr15:41851800-41852600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
12	chr15:41851800-41852600	Flanking Active TSS	HMEC	breast
13	chr15:41851800-41852600	Flanking Active TSS	NH-A	brain
14	chr15:41851800-41852800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:41851800-41852800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:41851800-41852800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:41851800-41852800	Flanking Active TSS	Fetal Stomach	stomach
18	chr15:41851800-41853000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
19	chr15:41851800-41853000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:41851800-41853000	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr15:41851800-41853000	Flanking Active TSS	Esophagus	oesophagus
22	chr15:41851800-41853000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
23	chr15:41851800-41853200	Flanking Active TSS	Dnd41	blood
24	chr15:41852000-41852600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
25	chr15:41852000-41852600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:41852000-41852600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:41852000-41852600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
28	chr15:41852000-41852600	Flanking Active TSS	Brain Cingulate Gyrus	brain
29	chr15:41852000-41852600	Flanking Active TSS	Fetal Lung	lung
30	chr15:41852000-41852600	Flanking Active TSS	K562	blood
31	chr15:41852000-41852800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
32	chr15:41852000-41852800	Flanking Active TSS	Fetal Intestine Large	intestine
33	chr15:41852000-41852800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
34	chr15:41852000-41852800	Flanking Active TSS	Hela-S3	cervix
35	chr15:41852000-41853000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr15:41852000-41853200	Transcr. at gene 5' and 3'	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr15:41852000-41853400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr15:41852000-41853400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr15:41852000-41853400	Flanking Active TSS	Brain Hippocampus Middle	brain
40	chr15:41852000-41853800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr15:41852200-41852600	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr15:41852200-41852600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:41852200-41852600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
44	chr15:41852200-41852600	Flanking Active TSS	Fetal Brain Male	brain
45	chr15:41852200-41852600	Flanking Active TSS	NHLF	lung
46	chr15:41852200-41852800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
47	chr15:41852200-41852800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr15:41852200-41852800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
49	chr15:41852200-41852800	Flanking Active TSS	Ovary	ovary
50	chr15:41852200-41853000	Flanking Active TSS	Fetal Intestine Small	intestine

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