Variant report

Variant	rs14153
Chromosome Location	chr5:16616264-16616265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr5:16616165-16617281	MCF-7	breast:	n/a	n/a
2	SIN3AK20	chr5:16615664-16617039	MCF-7	breast:	n/a	n/a
3	HA-E2F1	chr5:16615956-16617561	MCF-7	breast:	n/a	n/a
4	ZNF217	chr5:16615849-16616313	MCF-7	breast:	n/a	n/a
5	MAX	chr5:16616091-16617071	ECC-1	luminal epithelium:	n/a	n/a
6	REST	chr5:16615967-16617492	H1-neurons	neurons:	n/a	n/a
7	CTBP2	chr5:16616058-16618204	H1-hESC	embryonic stem cell:	n/a	n/a
8	MAX	chr5:16616187-16616982	ECC-1	luminal epithelium:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16615493..16618797-chr5:16619529..16623976,5	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BASP1-6	chr5:16616035-16616595	ENSG00000246214
2	lnc-BASP1-6	chr5:16615996-16616595	NONHSAT100608

No data

Variant related genes	Relation type
ENSG00000250415	TF binding region
ENSG00000201370	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs256893	0.88[CEU][hapmap];0.83[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs450657	0.82[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16614800-16616400	Active TSS	Right Atrium	heart
2	chr5:16614800-16617600	Active TSS	Brain Cingulate Gyrus	brain
3	chr5:16615200-16617200	Active TSS	Primary T cells from cord blood	blood
4	chr5:16615600-16616400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
5	chr5:16615600-16616400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr5:16615600-16616400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
7	chr5:16615600-16616600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
8	chr5:16615600-16616600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr5:16615600-16616600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chr5:16615600-16616600	Flanking Active TSS	Brain Anterior Caudate	brain
11	chr5:16615600-16617600	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr5:16615600-16617800	Active TSS	Brain Angular Gyrus	brain
13	chr5:16615800-16616400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
14	chr5:16615800-16616400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
15	chr5:16615800-16616400	Flanking Active TSS	Fetal Heart	heart
16	chr5:16615800-16616400	Active TSS	Fetal Intestine Large	intestine
17	chr5:16615800-16616400	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
18	chr5:16615800-16616400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
19	chr5:16615800-16616600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
20	chr5:16615800-16616600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
21	chr5:16615800-16616600	Bivalent/Poised TSS	Fetal Kidney	kidney
22	chr5:16615800-16617600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:16615800-16617600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr5:16615800-16617600	Active TSS	NHDF-Ad	bronchial
25	chr5:16615800-16617800	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr5:16615800-16618200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
27	chr5:16616000-16616400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr5:16616000-16616400	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:16616000-16616400	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
30	chr5:16616000-16616400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
31	chr5:16616000-16616400	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
32	chr5:16616000-16616400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
33	chr5:16616000-16616400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr5:16616000-16616400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr5:16616000-16616400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr5:16616000-16616400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr5:16616000-16616400	Flanking Active TSS	Fetal Brain Female	brain
38	chr5:16616000-16616400	Flanking Active TSS	Thymus	Thymus
39	chr5:16616000-16616400	Flanking Bivalent TSS/Enh	A549	lung
40	chr5:16616000-16616400	Bivalent/Poised TSS	NH-A	brain
41	chr5:16616000-16616600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
42	chr5:16616000-16616600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr5:16616000-16616600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
44	chr5:16616000-16616600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
45	chr5:16616000-16616600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr5:16616000-16616600	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr5:16616000-16616600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr5:16616000-16616600	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
49	chr5:16616000-16616600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr5:16616000-16616600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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