Variant report

Variant	rs1415601
Chromosome Location	chr13:38440568-38440569
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12584216	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1337601	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1538146	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1819607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1924379	0.87[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3812837	0.91[CEU][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3812840	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3812841	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs942345	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9532131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576388	0.91[CEU][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38436000-38440600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr13:38436400-38441400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr13:38436400-38442200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr13:38438000-38442400	Weak transcription	Ovary	ovary
5	chr13:38438400-38441400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr13:38438800-38440600	Enhancers	Osteobl	bone
7	chr13:38438800-38442400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:38439000-38441800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:38439000-38442800	Weak transcription	Colon Smooth Muscle	Colon
10	chr13:38439200-38440800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr13:38439400-38441400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:38440000-38444600	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr13:38440400-38441600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr13:38440400-38445000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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