Variant report

Variant	rs141594995
Chromosome Location	chr1:158518396-158518397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:158518363-158518413	AG10803	skin:	n/a
2	chr1:158518363-158518413	NT2-D1	testis:	n/a
3	chr1:158518363-158518413	AG04450	lung:	fetal
4	chr1:158518363-158518413	HRCEpiC	kidney:	n/a
5	chr1:158518363-158518413	HCF	heart:	n/a
6	chr1:158518363-158518413	ovcar-3	ovarian:	n/a
7	chr1:158518363-158518413	SK-N-SH_RA	brain:	n/a
8	chr1:158518363-158518413	LNCaP	prostate:	n/a
9	chr1:158518363-158518413	K562	blood:	n/a
10	chr1:158518363-158518413	GM12891	blood:	n/a
11	chr1:158518363-158518413	HEEpiC	esophagus:	n/a
12	chr1:158518363-158518413	NH-A	brain:	n/a
13	chr1:158518363-158518413	CMK	blood:	n/a
14	chr1:158518363-158518413	A549	lung:	n/a
15	chr1:158518363-158518413	HNPCEpiC	eye:	n/a
16	chr1:158518363-158518413	PANC-1	pancreas:	n/a
17	chr1:158518363-158518413	BJ	skin:	n/a
18	chr1:158518363-158518413	MCF-7	breast:	n/a
19	chr1:158518363-158518413	PFSK-1	brain:	n/a
20	chr1:158518363-158518413	HL-60	blood:	n/a
21	chr1:158518363-158518413	BE2_C	brain:	n/a
22	chr1:158518363-158518413	IMR90	lung:	fetal
23	chr1:158518363-158518413	AoSMC	blood vessel:	n/a
24	chr1:158518363-158518413	HCPEpiC	choroid plexus:	n/a
25	chr1:158518363-158518413	AG09309	skin:	n/a
26	chr1:158518363-158518413	Hepatocyte	liver:	n/a
27	chr1:158518363-158518413	HMEC	breast:	n/a
28	chr1:158518363-158518413	GM06990	blood:	n/a
29	chr1:158518363-158518413	AG04449	skin:	fetal
30	chr1:158518363-158518413	SK-N-MC	brain:	n/a
31	chr1:158518363-158518413	HRE	kidney:	n/a
32	chr1:158518363-158518413	SKMC	muscle:	n/a
33	chr1:158518363-158518413	Hela-S3	cervix:	n/a
34	chr1:158518363-158518413	ProgFib	skin:	n/a
35	chr1:158518363-158518413	NB4	blood:	n/a
36	chr1:158518363-158518413	SK-N-SH	brain:	n/a
37	chr1:158518363-158518413	Caco-2	colon:	n/a
38	chr1:158518363-158518413	HRPEpiC	eye:	n/a
39	chr1:158518363-158518413	Jurkat	blood:	n/a
40	chr1:158518363-158518413	MCF10A-Er-Src	breast:	n/a
41	chr1:158518363-158518413	T-47D	breast:	n/a
42	chr1:158518363-158518413	ECC-1	luminal epithelium:	n/a
43	chr1:158518363-158518413	HPAEpiC	pulmonary alveolar:	n/a
44	chr1:158518363-158518413	HAEpiC	amniotic membrane:	n/a
45	chr1:158518363-158518413	HCT-116	colon:	n/a
46	chr1:158518363-158518413	H1-hESC	embryonic stem cell:	embryo
47	chr1:158518363-158518413	HepG2	liver:	n/a
48	chr1:158518363-158518413	SAEC	small airway:	n/a
49	chr1:158518363-158518413	HIPEpiC	eye:	n/a
50	chr1:158518363-158518413	GM12878	blood:	n/a

No data

Variant related genes	Relation type
OR6Y1	CpG island

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470743	chr1:158484285-158521392	Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv547983	chr1:158495464-158523671	Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv437248	chr1:158511445-158524436	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv437249	chr1:158513048-158524436	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv437250	chr1:158513048-158524436	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2764188	chr1:158513048-158527524	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv998666	chr1:158514881-158525623	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1005658	chr1:158514881-158526572	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3452526	chr1:158516603-158521879	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3452527	chr1:158516618-158521888	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3452528	chr1:158516668-158521840	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3452529	chr1:158516668-158521840	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv2422163	chr1:158516836-158521392	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3692924	chr1:158516836-158523671	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1013656	chr1:158516984-158542929	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv1015106	chr1:158516984-158545423	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	esv1833445	chr1:158516996-158520417	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
18	nsv442095	chr1:158516996-158520417	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
19	nsv515774	chr1:158517353-158521392	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
20	nsv464117	chr1:158517353-158521392	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
21	nsv464128	chr1:158517353-158521392	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
22	nsv547984	chr1:158517353-158521392	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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