Variant report

Variant	rs141670198
Chromosome Location	chr6:24719255-24719256
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:24711892..24724164-chr6:24769415..24786834,81	K562	blood:
2	chr6:24719119..24721965-chr6:26020764..26023234,2	MCF-7	breast:
3	chr6:24715365..24725462-chr6:24770390..24783002,86	K562	blood:
4	chr6:24716219..24722234-chr6:24748111..24753033,8	K562	blood:
5	chr6:24718870..24722603-chr6:26025035..26028594,6	K562	blood:
6	chr6:24696748..24707740-chr6:24716503..24724189,24	MCF-7	breast:
7	chr6:24656525..24658806-chr6:24716394..24719369,2	K562	blood:
8	chr6:24494955..24497307-chr6:24719219..24721474,2	MCF-7	breast:
9	chr6:24493014..24496474-chr6:24718971..24722650,4	K562	blood:
10	chr6:24718549..24722818-chr6:24771512..24777723,8	MCF-7	breast:
11	chr6:24661385..24670379-chr6:24713871..24722680,32	K562	blood:
12	chr6:24402567..24404417-chr6:24718233..24720100,2	K562	blood:
13	chr6:24717870..24723661-chr6:24773711..24778808,16	MCF-7	breast:
14	chr6:24660920..24672880-chr6:24713381..24723000,42	K562	blood:
15	chr19:41222659..41224181-chr6:24717413..24720247,2	MCF-7	breast:
16	chr6:24654228..24658025-chr6:24716632..24719423,3	K562	blood:
17	chr6:24665745..24668755-chr6:24718443..24722281,4	MCF-7	breast:
18	chr6:20401095..20405762-chr6:24718847..24722714,7	K562	blood:
19	chr6:20400126..20404982-chr6:24718144..24722714,11	K562	blood:
20	chr6:24665870..24668527-chr6:24717869..24719492,2	MCF-7	breast:
21	chr6:24717725..24719805-chr6:24749363..24751038,2	MCF-7	breast:
22	chr6:24492199..24495699-chr6:24718792..24721987,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000272345	Chromatin interaction
ENSG00000112294	Chromatin interaction
ENSG00000224164	Chromatin interaction
ENSG00000196176	Chromatin interaction
ENSG00000086544	Chromatin interaction
ENSG00000112242	Chromatin interaction
ENSG00000112312	Chromatin interaction
ENSG00000124532	Chromatin interaction
ENSG00000272402	Chromatin interaction
ENSG00000112293	Chromatin interaction
ENSG00000124529	Chromatin interaction
ENSG00000111802	Chromatin interaction
ENSG00000218806	Chromatin interaction
ENSG00000123815	Chromatin interaction
ENSG00000112304	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3508002	chr6:24618580-24732946	Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	esv3508003	chr6:24618580-24732946	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
4	nsv428474	chr6:24714157-24797977	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
5	esv3423914	chr6:24719198-24721746	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24708800-24719400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:24712800-24719600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
3	chr6:24715000-24719600	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:24715200-24719600	Weak transcription	Spleen	Spleen
5	chr6:24715200-24720000	Transcr. at gene 5' and 3'	Dnd41	blood
6	chr6:24716200-24719400	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
7	chr6:24716200-24719600	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:24716200-24719600	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
9	chr6:24716400-24719600	Weak transcription	Esophagus	oesophagus
10	chr6:24716400-24719800	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
11	chr6:24716400-24719800	Transcr. at gene 5' and 3'	K562	blood
12	chr6:24716400-24720400	Active TSS	Right Atrium	heart
13	chr6:24716400-24722400	Active TSS	Ovary	ovary
14	chr6:24716600-24719600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:24716600-24719600	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr6:24716600-24719800	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr6:24716600-24720800	Active TSS	Aorta	Aorta
18	chr6:24716600-24722000	Active TSS	Stomach Mucosa	stomach
19	chr6:24716600-24722400	Active TSS	Right Ventricle	heart
20	chr6:24716800-24720000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:24716800-24720600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:24716800-24722400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:24716800-24722600	Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr6:24717000-24720000	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:24717000-24721800	Active TSS	NH-A	brain
26	chr6:24717000-24722200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:24717000-24722400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:24717000-24722400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr6:24717000-24722400	Active TSS	Brain Angular Gyrus	brain
30	chr6:24717000-24722600	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr6:24717200-24719600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:24717200-24719800	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:24717200-24719800	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
34	chr6:24717200-24719800	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
35	chr6:24717400-24719400	Flanking Active TSS	Brain Hippocampus Middle	brain
36	chr6:24717400-24719600	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:24717400-24719800	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
38	chr6:24717400-24722200	Active TSS	Fetal Intestine Large	intestine
39	chr6:24717600-24719600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
40	chr6:24717600-24719800	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
41	chr6:24717600-24722000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:24717600-24722200	Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr6:24717600-24722200	Active TSS	HSMMtube	muscle
44	chr6:24717800-24719400	Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr6:24717800-24719600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
46	chr6:24717800-24719600	Weak transcription	Gastric	stomach
47	chr6:24717800-24720400	Active TSS	Brain Germinal Matrix	brain
48	chr6:24717800-24722000	Active TSS	Fetal Intestine Small	intestine
49	chr6:24717800-24722000	Active TSS	Rectal Mucosa Donor 29	rectum
50	chr6:24717800-24722000	Active TSS	NHLF	lung

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