Variant report

Variant	rs141696398
Chromosome Location	chr3:111904389-111904390
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010219	chr3:111856709-111923647	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv967051	chr3:111902412-111904661	Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111885400-111904600	Weak transcription	Left Ventricle	heart
2	chr3:111892400-111904600	Weak transcription	Thymus	Thymus
3	chr3:111904200-111904400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:111904200-111904400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:111904200-111904800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:111904200-111905000	Active TSS	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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