Variant report

Variant	rs1416964
Chromosome Location	chr1:196515164-196515165
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10754189	1.00[AMR][1000 genomes]
rs10922074	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10922076	1.00[AMR][1000 genomes]
rs1339952	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1416965	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs1538688	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs6428342	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9782933	0.88[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196509800-196515400	Weak transcription	Liver	Liver
2	chr1:196509800-196529600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:196513200-196522400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:196514600-196515600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:196514600-196527600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:196515000-196516800	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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