Variant report
| Variant | rs1416969 |
|---|---|
| Chromosome Location | chr1:196479514-196479515 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:196479196..196481656-chr1:196490730..196492820,2 | K562 | blood: | |
| 2 | chr1:196462702..196464719-chr1:196478444..196481194,2 | K562 | blood: | |
| 3 | chr1:196479081..196481283-chr1:196483341..196485990,2 | MCF-7 | breast: | |
| 4 | chr1:196478927..196481406-chr1:196622982..196624630,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10737677 | 1.00[YRI][hapmap] |
| rs10801540 | 0.87[YRI][hapmap] |
| rs10801541 | 0.87[YRI][hapmap] |
| rs10801542 | 0.87[YRI][hapmap] |
| rs10922080 | 0.88[YRI][hapmap] |
| rs1339948 | 1.00[YRI][hapmap] |
| rs1339956 | 1.00[YRI][hapmap] |
| rs1361402 | 1.00[YRI][hapmap] |
| rs1416968 | 1.00[YRI][hapmap] |
| rs1538681 | 1.00[YRI][hapmap] |
| rs1538682 | 1.00[YRI][hapmap] |
| rs16839769 | 1.00[YRI][hapmap] |
| rs1890801 | 1.00[YRI][hapmap] |
| rs2335904 | 1.00[YRI][hapmap] |
| rs4290012 | 1.00[YRI][hapmap] |
| rs4607811 | 1.00[YRI][hapmap] |
| rs4658035 | 1.00[YRI][hapmap] |
| rs4658037 | 1.00[YRI][hapmap] |
| rs4658038 | 1.00[YRI][hapmap] |
| rs4658045 | 1.00[YRI][hapmap] |
| rs6413933 | 0.82[YRI][hapmap] |
| rs6428343 | 1.00[YRI][hapmap] |
| rs6428344 | 1.00[YRI][hapmap] |
| rs6428345 | 1.00[YRI][hapmap] |
| rs6678139 | 1.00[YRI][hapmap] |
| rs6679424 | 1.00[YRI][hapmap] |
| rs6690518 | 1.00[YRI][hapmap] |
| rs6690846 | 1.00[YRI][hapmap] |
| rs6692565 | 1.00[YRI][hapmap] |
| rs6698581 | 1.00[YRI][hapmap] |
| rs7511869 | 1.00[YRI][hapmap] |
| rs7512647 | 1.00[YRI][hapmap] |
| rs7527233 | 1.00[YRI][hapmap] |
| rs7544266 | 1.00[YRI][hapmap] |
| rs7552572 | 1.00[YRI][hapmap] |
| rs946754 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931415 | chr1:196270759-196744780 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1009233 | chr1:196301712-196568874 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:196436400-196485200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr1:196466000-196480800 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
