Variant report

Variant	rs1417092
Chromosome Location	chr10:16286319-16286320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10904688	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10904699	0.86[ASN][1000 genomes]
rs1340132	0.93[ASN][1000 genomes]
rs1417091	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538760	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1813934	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1813935	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1934637	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1934638	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1953307	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2184386	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2355242	0.82[EUR][1000 genomes]
rs4284310	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7074433	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7092247	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7918938	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530146	chr10:15722937-16522747	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv870420	chr10:16225427-16541252	Flanking Active TSS Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv894904	chr10:16233175-16477106	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831796	chr10:16240111-16393044	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv19845	chr10:16284959-16291617	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:16284200-16286600	Enhancers	H1 Cell Line	embryonic stem cell
2	chr10:16285600-16286800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr10:16286000-16286400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr10:16286000-16287600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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