Variant report
| Variant | rs141739502 |
|---|---|
| Chromosome Location | chr12:60736282-60736283 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:9)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:9 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chr12:60736280-60736430 | AG04449 | skin: | n/a | n/a |
| 2 | CTCF | chr12:60736280-60736430 | AG10803 | skin: | n/a | n/a |
| 3 | CTCF | chr12:60736260-60736410 | A549 | lung: | n/a | n/a |
| 4 | CTCF | chr12:60736240-60736390 | HMEC | breast: | n/a | n/a |
| 5 | RAD21 | chr12:60736251-60736565 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 6 | CTCF | chr12:60736220-60736370 | HMEC | breast: | n/a | n/a |
| 7 | CTCF | chr12:60736280-60736430 | HRE | kidney: | n/a | n/a |
| 8 | RAD21 | chr12:60736122-60736608 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 9 | RAD21 | chr12:60736206-60736544 | H1-hESC | embryonic stem cell: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000252607 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899137 | chr12:60568891-60797083 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1054287 | chr12:60601870-60861866 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv832431 | chr12:60626292-60809233 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1047466 | chr12:60702221-61521156 | Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 5 | nsv983465 | chr12:60721408-60752940 | Enhancers Weak transcription Flanking Active TSS | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 6 | esv2762983 | chr12:60735475-60767081 | Enhancers Active TSS Weak transcription | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
