Variant report

Variant	rs141753975
Chromosome Location	chr4:107083017-107083018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv508301	chr4:107049086-107092730	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv1799357	chr4:107058025-107099737	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1801434	chr4:107058025-107099737	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1800933	chr4:107058025-107118662	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1802243	chr4:107058025-107118662	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1802962	chr4:107058025-107118662	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1803376	chr4:107058025-107118662	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1848076	chr4:107058334-107118662	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv1851828	chr4:107059549-107118662	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv879702	chr4:107065718-107175191	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv879703	chr4:107082926-107163128	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107035600-107083200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:107038000-107112000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:107053800-107083400	Weak transcription	HSMM	muscle
4	chr4:107053800-107083800	Weak transcription	Left Ventricle	heart
5	chr4:107053800-107101600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr4:107054000-107083200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:107054000-107083400	Weak transcription	Pancreas	Pancrea
8	chr4:107054000-107091000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:107054000-107113600	Weak transcription	Brain Anterior Caudate	brain
10	chr4:107054200-107083400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:107056200-107083400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr4:107065000-107083400	Weak transcription	Brain Germinal Matrix	brain
13	chr4:107066400-107151200	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:107067400-107083600	Weak transcription	Fetal Kidney	kidney
15	chr4:107068600-107083200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:107068600-107083600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:107070200-107083200	Weak transcription	Brain Hippocampus Middle	brain
18	chr4:107070200-107083400	Weak transcription	Fetal Muscle Leg	muscle
19	chr4:107070400-107083200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr4:107070600-107084200	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr4:107071800-107176400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr4:107072200-107083400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr4:107073000-107086800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr4:107074200-107114400	Weak transcription	NHDF-Ad	bronchial
25	chr4:107074400-107083400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:107074600-107111800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr4:107075200-107091000	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr4:107075400-107083200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr4:107075800-107114000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr4:107075800-107118200	Weak transcription	Brain Substantia Nigra	brain
31	chr4:107075800-107129600	Weak transcription	Spleen	Spleen
32	chr4:107076000-107083800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr4:107076400-107083600	Weak transcription	Primary B cells from peripheral blood	blood
34	chr4:107076400-107114200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr4:107076800-107083600	Weak transcription	Thymus	Thymus
36	chr4:107077000-107089600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr4:107077600-107083400	Weak transcription	Esophagus	oesophagus
38	chr4:107077800-107083200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr4:107077800-107083200	Weak transcription	Fetal Lung	lung
40	chr4:107078000-107083200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr4:107078000-107083400	Weak transcription	Gastric	stomach
42	chr4:107078000-107083600	Weak transcription	Dnd41	blood
43	chr4:107078000-107083800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr4:107078000-107107800	Weak transcription	HSMMtube	muscle
45	chr4:107078200-107083200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr4:107078200-107116000	Weak transcription	Colonic Mucosa	Colon
47	chr4:107078400-107083200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:107078400-107083400	Weak transcription	Lung	lung
49	chr4:107078600-107083400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr4:107078600-107084200	Weak transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links