Variant report

Variant	rs141757936
Chromosome Location	chr20:52766349-52766350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:52739465..52740961-chr20:52765012..52766665,338	MCF-7	breast:
2	chr20:52765013..52767443-chr20:55839272..55842153,3	MCF-7	breast:
3	chr17:57921159..57923705-chr20:52764319..52767387,3	MCF-7	breast:
4	chr17:56716690..56718038-chr20:52765233..52766444,54	MCF-7	breast:
5	chr20:52739578..52741059-chr20:52765012..52766367,586	MCF-7	breast:
6	chr20:52747406..52750042-chr20:52765504..52767989,2	K562	blood:
7	chr20:52765702..52767695-chr20:52867432..52869251,2	MCF-7	breast:
8	chr20:52739738..52741068-chr20:52764992..52766400,210	MCF-7	breast:
9	chr20:52764971..52766731-chr20:52811022..52812911,766	MCF-7	breast:
10	chr17:56735238..56739776-chr20:52762796..52768683,6	MCF-7	breast:
11	chr20:52726536..52727770-chr20:52765262..52766411,6	MCF-7	breast:
12	chr20:52764733..52766360-chr20:52810946..52812641,239	MCF-7	breast:
13	chr20:52765145..52766456-chr20:52811076..52812871,393	MCF-7	breast:
14	chr20:41007695..41010681-chr20:52764867..52766401,2	MCF-7	breast:
15	chr17:56735044..56737972-chr20:52763206..52766874,4	MCF-7	breast:
16	chr17:56716658..56718401-chr20:52765233..52766626,125	MCF-7	breast:
17	chr20:52765182..52766890-chr20:52811098..52812679,34	MCF-7	breast:
18	chr20:52209728..52211636-chr20:52765804..52767371,2	MCF-7	breast:
19	chr20:52743021..52744541-chr20:52765021..52766396,99	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000101144	Chromatin interaction
ENSG00000226308	Chromatin interaction
ENSG00000266826	Chromatin interaction
ENSG00000171940	Chromatin interaction
ENSG00000202077	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv912945	chr20:52746724-52772741	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv912946	chr20:52758416-52772741	Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
5	nsv1063981	chr20:52765317-52776613	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
6	esv2762085	chr20:52765329-52776625	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv586281	chr20:52765349-52771171	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv1058882	chr20:52765979-52794372	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52758600-52768800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:52764800-52766400	Enhancers	HepG2	liver
3	chr20:52764800-52766600	Enhancers	Hela-S3	cervix
4	chr20:52765400-52766400	Enhancers	Fetal Intestine Large	intestine
5	chr20:52765400-52766600	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr20:52765600-52766400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr20:52765600-52766400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr20:52765800-52766400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr20:52765800-52766400	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr20:52765800-52768400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr20:52766000-52766800	Flanking Active TSS	A549	lung
12	chr20:52766000-52768800	Weak transcription	NHEK	skin
13	chr20:52766200-52766400	Bivalent Enhancer	Small Intestine	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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