Variant report

Variant	rs141776518
Chromosome Location	chr1:159919682-159919683
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:159914087..159917406-chr1:159919502..159922854,5	K562	blood:
2	chr1:159906196..159907844-chr1:159918689..159920496,2	K562	blood:
3	chr1:159914087..159917108-chr1:159918737..159921842,4	K562	blood:
4	chr1:159912050..159914185-chr1:159918859..159921422,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000085552	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872489	chr1:159844819-159940000	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv524006	chr1:159886422-159923111	Flanking Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv548055	chr1:159918418-159940000	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159916200-159919800	Enhancers	Fetal Intestine Small	intestine
2	chr1:159916200-159920000	Enhancers	Stomach Mucosa	stomach
3	chr1:159916200-159930600	Weak transcription	Right Atrium	heart
4	chr1:159916600-159920800	Weak transcription	Fetal Lung	lung
5	chr1:159916800-159923600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:159917000-159919800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr1:159917000-159923400	Weak transcription	NHEK	skin
8	chr1:159917600-159919800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr1:159918000-159919800	Enhancers	Duodenum Mucosa	Duodenum
10	chr1:159918200-159919800	Enhancers	Fetal Intestine Large	intestine
11	chr1:159918600-159920000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr1:159918600-159920000	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr1:159918600-159920400	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr1:159918600-159921400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr1:159918800-159919800	Enhancers	Esophagus	oesophagus
16	chr1:159919000-159920000	Enhancers	Fetal Stomach	stomach
17	chr1:159919200-159919800	Weak transcription	Gastric	stomach
18	chr1:159919200-159920200	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr1:159919400-159923600	Weak transcription	K562	blood
20	chr1:159919600-159919800	Enhancers	Lung	lung
21	chr1:159919600-159920400	Enhancers	Colonic Mucosa	Colon
22	chr1:159919600-159923000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr1:159919600-159923400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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