Variant report

Variant	rs141786722
Chromosome Location	chr5:106726165-106726166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv527761	chr5:106725691-106728586	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106720400-106740800	Weak transcription	Aorta	Aorta
2	chr5:106723600-106726200	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr5:106723600-106728200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:106723600-106732000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:106724000-106728200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:106724200-106730200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:106724800-106729000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:106725000-106729800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:106725200-106726200	Enhancers	NHDF-Ad	bronchial
10	chr5:106725200-106729600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr5:106725200-106730000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr5:106725200-106733800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:106725400-106726200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr5:106725400-106726200	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr5:106725400-106726200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:106725400-106726200	Enhancers	HUVEC	blood vessel
17	chr5:106725400-106727400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr5:106725400-106729400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr5:106725400-106729400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:106725400-106729600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr5:106725600-106726200	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr5:106725600-106727000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr5:106725600-106728200	Weak transcription	Fetal Kidney	kidney
24	chr5:106725600-106729200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr5:106725600-106729400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr5:106725600-106729600	Weak transcription	Fetal Lung	lung
27	chr5:106725600-106732200	Weak transcription	Left Ventricle	heart
28	chr5:106725800-106726200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr5:106725800-106726200	Enhancers	A549	lung
30	chr5:106725800-106727000	Weak transcription	HSMM	muscle
31	chr5:106725800-106727800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr5:106725800-106727800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr5:106725800-106729400	Weak transcription	NHLF	lung
34	chr5:106725800-106729800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr5:106725800-106730200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr5:106725800-106731200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr5:106725800-106731800	Weak transcription	Osteobl	bone
38	chr5:106725800-106732000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr5:106725800-106732000	Weak transcription	Fetal Heart	heart
40	chr5:106725800-106732400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr5:106725800-106740400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr5:106726000-106727800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr5:106726000-106728000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr5:106726000-106729400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr5:106726000-106729400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr5:106726000-106729400	Weak transcription	HMEC	breast
47	chr5:106726000-106730000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr5:106726000-106730000	Weak transcription	Stomach Mucosa	stomach
49	chr5:106726000-106731000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr5:106726000-106731400	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links