Variant report

Variant	rs141794037
Chromosome Location	chr11:66844801-66844802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66842897..66845460-chr16:20741423..20744346,2	MCF-7	breast:
2	chr11:66795520..66800243-chr11:66842447..66847308,8	MCF-7	breast:
3	chr11:66751363..66756232-chr11:66844314..66849671,8	MCF-7	breast:
4	chr11:66788535..66793163-chr11:66843728..66847752,10	MCF-7	breast:
5	chr11:66844181..66847775-chr11:67079244..67082122,3	MCF-7	breast:
6	chr11:66622562..66624128-chr11:66843340..66844958,2	MCF-7	breast:
7	chr11:66843398..66845458-chr11:66847926..66850776,2	MCF-7	breast:
8	chr11:66741669..66743697-chr11:66844608..66846360,2	MCF-7	breast:
9	chr11:66836812..66842156-chr11:66842651..66845856,9	MCF-7	breast:
10	chr11:66780973..66783340-chr11:66843996..66846354,2	MCF-7	breast:
11	chr11:66843754..66847684-chr11:66886788..66890300,5	MCF-7	breast:
12	chr11:66788209..66792754-chr11:66842062..66847594,9	MCF-7	breast:
13	chr11:66844176..66846694-chr11:67055036..67058440,3	MCF-7	breast:
14	chr11:66837948..66839909-chr11:66844493..66847036,2	K562	blood:
15	chr11:66843110..66845610-chr11:67055483..67057190,2	K562	blood:
16	chr11:66797798..66801949-chr11:66843586..66847456,4	MCF-7	breast:
17	chr11:66748815..66755953-chr11:66843606..66849844,15	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000173237	Chromatin interaction
ENSG00000173120	Chromatin interaction
ENSG00000172932	Chromatin interaction
ENSG00000173227	Chromatin interaction
ENSG00000173621	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555226	chr11:66579572-66845362	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
3	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	esv3470874	chr11:66842691-66845080	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv3470885	chr11:66842691-66845080	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv11382	chr11:66843375-66844907	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv555241	chr11:66843402-66844860	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv555243	chr11:66843454-66844860	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv555244	chr11:66843507-66844808	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv555246	chr11:66843877-66844860	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66825200-66849200	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:66825400-66849400	Weak transcription	Ovary	ovary
3	chr11:66828000-66845600	Weak transcription	Osteobl	bone
4	chr11:66839200-66845000	Weak transcription	Gastric	stomach
5	chr11:66839400-66845200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:66839400-66845800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:66839400-66849400	Weak transcription	Lung	lung
8	chr11:66839400-66849400	Weak transcription	Right Atrium	heart
9	chr11:66839400-66849400	Weak transcription	Right Ventricle	heart
10	chr11:66840200-66845800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:66840400-66845200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:66840400-66845800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:66841800-66845000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:66842200-66846000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr11:66843400-66846600	Enhancers	Fetal Intestine Large	intestine
16	chr11:66843400-66846600	Enhancers	GM12878-XiMat	blood
17	chr11:66843400-66846800	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr11:66843600-66847000	Enhancers	Fetal Intestine Small	intestine
19	chr11:66843800-66847200	Enhancers	Placenta Amnion	Placenta Amnion
20	chr11:66844000-66845000	Enhancers	Duodenum Mucosa	Duodenum
21	chr11:66844000-66846000	Enhancers	Fetal Muscle Leg	muscle
22	chr11:66844000-66846400	Enhancers	K562	blood
23	chr11:66844000-66849400	Weak transcription	Pancreas	Pancrea
24	chr11:66844400-66845000	Enhancers	HMEC	breast
25	chr11:66844400-66847200	Enhancers	Placenta	Placenta
26	chr11:66844600-66845000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:66844600-66845000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:66844600-66845600	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr11:66844600-66846400	Enhancers	Colonic Mucosa	Colon
30	chr11:66844600-66846600	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr11:66844600-66846800	Flanking Active TSS	Hela-S3	cervix
32	chr11:66844600-66846800	Enhancers	NHEK	skin
33	chr11:66844600-66847000	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr11:66844600-66847000	Enhancers	Stomach Mucosa	stomach
35	chr11:66844600-66847200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:66844600-66847200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:66844800-66845000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:66844800-66845000	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr11:66844800-66845200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
40	chr11:66844800-66845600	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr11:66844800-66846200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:66844800-66846400	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr11:66844800-66846400	Flanking Active TSS	HepG2	liver
44	chr11:66844800-66846600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr11:66844800-66846800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:66844800-66847000	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr11:66844800-66847200	Enhancers	A549	lung
48	chr11:66844800-66848000	Enhancers	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links