Variant report

Variant	rs141800287
Chromosome Location	chr11:4927935-4927936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:4927915-4927965	HCF	heart:	n/a
2	chr11:4927915-4927965	Hela-S3	cervix:	n/a
3	chr11:4927915-4927965	GM19239	blood:	n/a
4	chr11:4927915-4927965	HMEC	breast:	n/a
5	chr11:4927915-4927965	U87	brain:	n/a
6	chr11:4927915-4927965	HL-60	blood:	n/a
7	chr11:4927915-4927965	Jurkat	blood:	n/a
8	chr11:4927915-4927965	MCF10A-Er-Src	breast:	n/a
9	chr11:4927915-4927965	T-47D	breast:	n/a
10	chr11:4927915-4927965	AG10803	skin:	n/a
11	chr11:4927915-4927965	HAEpiC	amniotic membrane:	n/a
12	chr11:4927915-4927965	Hepatocyte	liver:	n/a
13	chr11:4927915-4927965	NHBE	bronchial:	n/a
14	chr11:4927915-4927965	K562	blood:	n/a
15	chr11:4927915-4927965	SK-N-SH	brain:	n/a
16	chr11:4927915-4927965	GM06990	blood:	n/a
17	chr11:4927915-4927965	ovcar-3	ovarian:	n/a
18	chr11:4927915-4927965	HUVEC	blood vessel:	n/a
19	chr11:4927915-4927965	ECC-1	luminal epithelium:	n/a
20	chr11:4927915-4927965	BJ	skin:	n/a
21	chr11:4927915-4927965	SK-N-MC	brain:	n/a
22	chr11:4927915-4927965	HCT-116	colon:	n/a
23	chr11:4927915-4927965	AG04450	lung:	fetal
24	chr11:4927915-4927965	PrEC	prostate:	n/a
25	chr11:4927915-4927965	NH-A	brain:	n/a
26	chr11:4927915-4927965	MCF-7	breast:	n/a
27	chr11:4927915-4927965	NHDF-neo	bronchial:	n/a
28	chr11:4927915-4927965	PFSK-1	brain:	n/a
29	chr11:4927915-4927965	BE2_C	brain:	n/a
30	chr11:4927915-4927965	HEEpiC	esophagus:	n/a
31	chr11:4927915-4927965	AG09309	skin:	n/a
32	chr11:4927915-4927965	IMR90	lung:	fetal
33	chr11:4927915-4927965	ProgFib	skin:	n/a
34	chr11:4927915-4927965	HRE	kidney:	n/a
35	chr11:4927915-4927965	HepG2	liver:	n/a
36	chr11:4927915-4927965	PANC-1	pancreas:	n/a
37	chr11:4927915-4927965	LNCaP	prostate:	n/a
38	chr11:4927915-4927965	NB4	blood:	n/a
39	chr11:4927915-4927965	SK-N-SH_RA	brain:	n/a
40	chr11:4927915-4927965	SKMC	muscle:	n/a
41	chr11:4927915-4927965	GM12891	blood:	n/a
42	chr11:4927915-4927965	HIPEpiC	eye:	n/a
43	chr11:4927915-4927965	HPAEpiC	pulmonary alveolar:	n/a
44	chr11:4927915-4927965	CMK	blood:	n/a
45	chr11:4927915-4927965	GM12892	blood:	n/a
46	chr11:4927915-4927965	RPTEC	kidney:	n/a
47	chr11:4927915-4927965	NT2-D1	testis:	n/a
48	chr11:4927915-4927965	HRPEpiC	eye:	n/a
49	chr11:4927915-4927965	HCM	heart:	n/a
50	chr11:4927915-4927965	AG04449	skin:	fetal

No data

Variant related genes	Relation type
OR51A7	CpG island

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	esv2758254	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	esv2759799	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
4	nsv896917	chr11:4917089-4935470	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv521088	chr11:4925933-4928866	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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