Variant report

Variant	rs141804394
Chromosome Location	chr16:48109794-48109795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv2761906	chr16:48109727-48125855	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48108800-48112200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr16:48109000-48109800	Enhancers	Osteobl	bone
3	chr16:48109000-48110200	Enhancers	HSMM	muscle
4	chr16:48109000-48110400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr16:48109000-48110800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr16:48109000-48110800	Enhancers	NHDF-Ad	bronchial
7	chr16:48109000-48111200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr16:48109000-48112200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr16:48109200-48110600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr16:48109200-48110800	Enhancers	NH-A	brain
11	chr16:48109200-48111000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr16:48109200-48111000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr16:48109400-48111000	Enhancers	HepG2	liver
14	chr16:48109600-48109800	Enhancers	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links