Variant report

Variant	rs141810300
Chromosome Location	chr1:155699187-155699188
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
2	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
3	nsv1002390	chr1:155553423-155706930	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv428246	chr1:155558197-155785831	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	esv3381327	chr1:155582853-155718436	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	esv3436971	chr1:155618172-155733386	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	esv3338099	chr1:155618190-155733359	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
8	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
9	nsv3065	chr1:155682768-155727524	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
10	nsv947547	chr1:155698814-155708436	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155660400-155706200	Weak transcription	Colonic Mucosa	Colon
2	chr1:155661600-155707800	Weak transcription	HUVEC	blood vessel
3	chr1:155663200-155701000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:155665200-155708000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:155665600-155707200	Weak transcription	Psoas Muscle	Psoas
6	chr1:155665800-155707000	Weak transcription	Small Intestine	intestine
7	chr1:155669200-155702200	Weak transcription	Gastric	stomach
8	chr1:155673800-155707800	Weak transcription	Aorta	Aorta
9	chr1:155676400-155706200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:155677400-155705200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:155679400-155710400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:155679800-155704200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr1:155681600-155707800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr1:155683000-155703200	Weak transcription	Spleen	Spleen
15	chr1:155683200-155715000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr1:155683400-155699200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr1:155683400-155707800	Weak transcription	Fetal Heart	heart
18	chr1:155683800-155709000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr1:155683800-155715000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:155684000-155700000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr1:155684000-155707800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr1:155685200-155704800	Strong transcription	Fetal Thymus	thymus
23	chr1:155687200-155715000	Weak transcription	Esophagus	oesophagus
24	chr1:155687600-155699200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr1:155688400-155705000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr1:155688400-155711200	Strong transcription	Fetal Muscle Leg	muscle
27	chr1:155688800-155710800	Strong transcription	Fetal Stomach	stomach
28	chr1:155688800-155711000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:155689200-155706000	Weak transcription	Fetal Brain Male	brain
30	chr1:155689200-155709400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:155689800-155701400	Weak transcription	Brain Germinal Matrix	brain
32	chr1:155690200-155706200	Weak transcription	Lung	lung
33	chr1:155690600-155702800	Weak transcription	Fetal Lung	lung
34	chr1:155691000-155709000	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr1:155691200-155704600	Strong transcription	Placenta	Placenta
36	chr1:155691200-155705200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr1:155691800-155706200	Weak transcription	NHDF-Ad	bronchial
38	chr1:155692000-155700200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr1:155692200-155706200	Weak transcription	Ovary	ovary
40	chr1:155693200-155699400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr1:155693800-155704800	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr1:155694000-155702600	Weak transcription	Thymus	Thymus
43	chr1:155694800-155700400	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr1:155694800-155704400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr1:155694800-155704600	Strong transcription	Dnd41	blood
46	chr1:155694800-155704600	Strong transcription	Hela-S3	cervix
47	chr1:155694800-155705000	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr1:155695000-155699200	Weak transcription	Fetal Intestine Small	intestine
49	chr1:155695000-155704400	Strong transcription	Fetal Muscle Trunk	muscle
50	chr1:155695000-155704600	Strong transcription	Primary monocytes fromperipheralblood	blood

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