Variant report

Variant	rs141856545
Chromosome Location	chr2:37909945-37909946
allele	-/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRKD3-1	chr2:37909895-37910079	NONHSAT070137
2	lnc-PRKD3-1	chr2:37909895-37910045	ucscGeneNc_uc002rqj_1

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757793	chr2:37796654-38138939	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv2759043	chr2:37796654-38138939	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv833825	chr2:37808169-37985917	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv535645	chr2:37853282-37972640	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv535646	chr2:37853282-38014428	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv873880	chr2:37868214-37926046	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv535647	chr2:37874563-38014428	Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv998567	chr2:37886244-37910627	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2763655	chr2:37905976-37933740	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv1824236	chr2:37907573-37991077	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv2752904	chr2:37909108-37998930	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	esv2752847	chr2:37909108-38002857	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	esv2754553	chr2:37909108-38004448	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv2756917	chr2:37909387-38005308	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37900200-37916000	Weak transcription	Psoas Muscle	Psoas
2	chr2:37900400-37910000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:37902400-37910600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr2:37903400-37910000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr2:37903800-37910600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:37904000-37911200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:37905600-37910000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:37907000-37921000	Weak transcription	Stomach Mucosa	stomach
9	chr2:37907200-37910200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr2:37907200-37914200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:37907400-37910200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr2:37909600-37910000	Enhancers	K562	blood
13	chr2:37909600-37910200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr2:37909600-37911400	Enhancers	Fetal Heart	heart
15	chr2:37909600-37911600	Enhancers	Primary T cells fromperipheralblood	blood
16	chr2:37909600-37911800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr2:37909600-37911800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr2:37909600-37912000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr2:37909600-37912000	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr2:37909800-37910600	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr2:37909800-37911600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr2:37909800-37911800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr2:37909800-37912000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr2:37909800-37912000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr2:37909800-37912200	Enhancers	Primary T cells from cord blood	blood
26	chr2:37909800-37912200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr2:37909800-37912600	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr2:37909800-37912800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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