Variant report

Variant	rs141861349
Chromosome Location	chr5:114875259-114875260
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:114873536..114875419-chr5:114960010..114961720,2	K562	blood:
2	chr5:114871294..114875752-chr5:114877507..114881029,8	MCF-7	breast:
3	chr5:114872131..114874195-chr5:114874384..114876871,2	MCF-7	breast:
4	chr5:114870046..114871711-chr5:114873556..114876513,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251201	Chromatin interaction
ENSG00000145780	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv830455	chr5:114761542-114938284	Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1032234	chr5:114785557-114911527	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv1796164	chr5:114854685-114936768	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv965571	chr5:114874943-114878934	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114857800-114877200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:114858600-114878800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:114858800-114876200	Weak transcription	Fetal Stomach	stomach
4	chr5:114860800-114877200	Weak transcription	Colonic Mucosa	Colon
5	chr5:114861000-114878600	Weak transcription	Pancreas	Pancrea
6	chr5:114861000-114878800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:114861000-114878800	Weak transcription	Spleen	Spleen
8	chr5:114861200-114875800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr5:114861200-114878600	Weak transcription	Esophagus	oesophagus
10	chr5:114861400-114875400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr5:114861400-114877200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:114863600-114878600	Weak transcription	Gastric	stomach
13	chr5:114867800-114875600	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr5:114868400-114878000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr5:114869000-114875400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:114869200-114875600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr5:114869200-114876200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:114870000-114875400	Strong transcription	K562	blood
19	chr5:114870000-114876200	Strong transcription	Fetal Thymus	thymus
20	chr5:114870000-114877400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
21	chr5:114870400-114875800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
22	chr5:114870600-114875400	Strong transcription	A549	lung
23	chr5:114870600-114875600	Strong transcription	NH-A	brain
24	chr5:114871000-114876400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:114871200-114875400	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr5:114871200-114875800	Genic enhancers	Primary T cells from cord blood	blood
27	chr5:114871200-114879200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr5:114871600-114875400	Strong transcription	Osteobl	bone
29	chr5:114871600-114875600	Strong transcription	Primary hematopoietic stem cells	blood
30	chr5:114871600-114875600	Genic enhancers	Monocytes-CD14+_RO01746	blood
31	chr5:114871600-114875800	Strong transcription	Placenta	Placenta
32	chr5:114871600-114876600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr5:114871800-114876000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
34	chr5:114872000-114875800	Enhancers	Brain Cingulate Gyrus	brain
35	chr5:114872200-114875400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr5:114872200-114875800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr5:114872200-114877400	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr5:114872400-114876200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr5:114872400-114876600	Weak transcription	HSMMtube	muscle
40	chr5:114872400-114877000	Enhancers	Colon Smooth Muscle	Colon
41	chr5:114872600-114875400	Genic enhancers	Rectal Mucosa Donor 31	rectum
42	chr5:114872600-114875400	Genic enhancers	HUVEC	blood vessel
43	chr5:114872600-114879400	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
44	chr5:114872800-114876400	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr5:114873000-114875400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr5:114873000-114875400	Genic enhancers	Duodenum Smooth Muscle	Duodenum
47	chr5:114873000-114875800	Genic enhancers	Fetal Lung	lung
48	chr5:114873000-114875800	Strong transcription	Fetal Muscle Leg	muscle
49	chr5:114873200-114875400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr5:114873200-114876600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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