Variant report

Variant	rs1418838
Chromosome Location	chr1:158406703-158406704
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1418839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16840139	1.00[YRI][hapmap]
rs16840141	1.00[YRI][hapmap]
rs16840176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56037590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56788498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023893	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023900	0.83[AMR][1000 genomes]
rs73025811	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv998569	chr1:158317392-158443389	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158405200-158410000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr1:158405200-158410200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr1:158405200-158410200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr1:158405400-158406800	Weak transcription	Dnd41	blood
5	chr1:158406600-158415000	Weak transcription	Thymus	Thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links