Variant report

Variant	rs1418854
Chromosome Location	chr6:66893284-66893285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:66890125..66893594-chr6:66896979..66900309,4	MCF-7	breast:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10806526	0.81[EUR][1000 genomes]
rs1342961	0.81[AFR][1000 genomes]
rs1578765	0.83[EUR][1000 genomes]
rs1891599	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1891600	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1935895	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2040594	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs208435	0.85[AFR][1000 genomes]
rs208440	0.85[AFR][1000 genomes]
rs2093253	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2097679	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2157963	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2157964	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2188589	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2188590	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2188591	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2214126	0.81[ASN][1000 genomes]
rs4710570	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4710571	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4710572	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4710573	0.83[EUR][1000 genomes]
rs4710574	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4710575	0.83[EUR][1000 genomes]
rs4710576	0.83[EUR][1000 genomes]
rs4710577	0.82[EUR][1000 genomes]
rs4710578	0.83[EUR][1000 genomes]
rs4710580	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4710581	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4710582	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4710583	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4710585	0.81[ASN][1000 genomes]
rs6455084	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67960568	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903411	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6904511	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6927407	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6927862	0.81[ASN][1000 genomes]
rs6931701	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71544326	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7743965	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7749120	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751095	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755840	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755994	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7756519	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7757118	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7757647	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7759888	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762308	0.83[EUR][1000 genomes]
rs7769722	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771569	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7771716	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7773577	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775899	0.82[ASN][1000 genomes]
rs851599	0.83[AFR][1000 genomes]
rs851603	0.85[AFR][1000 genomes]
rs851604	0.85[AFR][1000 genomes]
rs9294684	0.83[EUR][1000 genomes]
rs9294687	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9345777	0.83[EUR][1000 genomes]
rs9345778	0.83[EUR][1000 genomes]
rs9345779	0.81[EUR][1000 genomes]
rs9354390	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9354391	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9354392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9354403	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9354404	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9354405	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9360187	0.82[EUR][1000 genomes]
rs9360189	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9360190	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9360191	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9363544	0.81[EUR][1000 genomes]
rs9363558	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9453639	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs979693	0.83[EUR][1000 genomes]
rs979694	0.83[EUR][1000 genomes]
rs979695	0.83[EUR][1000 genomes]
rs979696	0.83[EUR][1000 genomes]
rs979697	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886037	chr6:66528177-67026420	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv886038	chr6:66528177-67054961	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv497999	chr6:66583321-67473511	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv886044	chr6:66722969-66977330	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv830676	chr6:66751274-66932913	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv970377	chr6:66845633-67038785	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2422329	chr6:66849253-66916806	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv886046	chr6:66885658-66952268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
9	nsv886047	chr6:66885658-66957869	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
10	nsv886048	chr6:66885658-66977330	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
11	nsv886049	chr6:66885658-67004518	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
12	nsv886050	chr6:66885658-67026420	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
13	nsv886051	chr6:66885658-67054961	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
14	nsv830677	chr6:66888764-67051144	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
15	nsv916697	chr6:66892573-67336786	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:66888800-66893400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:66892800-66895400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:66893000-66893400	Enhancers	NHDF-Ad	bronchial
4	chr6:66893200-66894200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links