Variant report

Variant	rs141885852
Chromosome Location	chr4:129956698-129956699
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1030513	chr4:129770961-129965026	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv522694	chr4:129862073-129994690	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv966220	chr4:129955209-129958089	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2627674	chr4:129956698-129956698	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	esv2174599	chr4:129956698-129956699	Weak transcription Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129937200-129964000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:129943200-129960200	Weak transcription	Primary B cells from cord blood	blood
3	chr4:129944400-129961000	Weak transcription	Primary T cells from cord blood	blood
4	chr4:129944600-129962800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr4:129944800-129958400	Weak transcription	Liver	Liver
6	chr4:129944800-129965400	Weak transcription	Ovary	ovary
7	chr4:129945600-129958600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:129945600-129981800	Weak transcription	Thymus	Thymus
9	chr4:129951200-129958400	Weak transcription	Dnd41	blood
10	chr4:129951200-129962400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr4:129951200-129967200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr4:129951400-129958600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr4:129951400-129976200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:129953400-129962600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:129953600-129965600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr4:129953600-129965600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:129953800-129958400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr4:129954200-129959600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr4:129954800-129964400	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr4:129955000-129960200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr4:129955000-129965200	Weak transcription	K562	blood
22	chr4:129955200-129961000	Weak transcription	GM12878-XiMat	blood
23	chr4:129956000-129956800	Enhancers	Fetal Heart	heart
24	chr4:129956000-129958800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr4:129956000-129962600	Weak transcription	HMEC	breast
26	chr4:129956400-129962200	Weak transcription	Fetal Lung	lung
27	chr4:129956600-129956800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr4:129956600-129962400	Weak transcription	Left Ventricle	heart

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