Variant report

Variant	rs141935475
Chromosome Location	chr4:166132237-166132238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr4:166131532-166132271	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166131315..166133290-chr4:166248025..166250572,2	MCF-7	breast:
2	chr4:166127800..166130090-chr4:166130347..166132969,2	MCF-7	breast:

Variant related genes	Relation type
TMEM192	TF binding region
ENSG00000109466	Chromatin interaction
ENSG00000170088	Chromatin interaction
ENSG00000052802	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1021905	chr4:165852926-166212878	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv533191	chr4:165879671-166171638	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv881168	chr4:165975122-166196438	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv967809	chr4:166131906-166137884	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166129600-166134600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:166129600-166137800	Weak transcription	Small Intestine	intestine
3	chr4:166129600-166154400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:166129600-166196800	Weak transcription	Pancreas	Pancrea
5	chr4:166129800-166133800	Weak transcription	Fetal Kidney	kidney
6	chr4:166129800-166142600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:166130200-166132600	Enhancers	Primary T cells from cord blood	blood
8	chr4:166130200-166132600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr4:166130200-166134600	Weak transcription	A549	lung
10	chr4:166130200-166135600	Weak transcription	Osteobl	bone
11	chr4:166130200-166137600	Weak transcription	HSMMtube	muscle
12	chr4:166130200-166150800	Weak transcription	Fetal Intestine Large	intestine
13	chr4:166130400-166132400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr4:166130400-166133000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr4:166130400-166134000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr4:166130400-166137200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:166130400-166138000	Weak transcription	Stomach Mucosa	stomach
18	chr4:166130400-166142400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr4:166130400-166143400	Weak transcription	Fetal Thymus	thymus
20	chr4:166130400-166143600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:166130400-166143600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:166130400-166143600	Weak transcription	HSMM	muscle
23	chr4:166130400-166176800	Weak transcription	Fetal Intestine Small	intestine
24	chr4:166130600-166132400	Enhancers	HepG2	liver
25	chr4:166130600-166132600	Enhancers	Liver	Liver
26	chr4:166130600-166133000	Enhancers	HMEC	breast
27	chr4:166130600-166133400	Enhancers	NHEK	skin
28	chr4:166130600-166134200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr4:166130600-166135600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr4:166130600-166136800	Weak transcription	Adipose Nuclei	Adipose
31	chr4:166130600-166137000	Weak transcription	NH-A	brain
32	chr4:166130600-166137800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr4:166130600-166142400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr4:166130600-166142400	Weak transcription	Right Ventricle	heart
35	chr4:166130600-166142800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr4:166130600-166143200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr4:166130600-166146200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:166130600-166200800	Weak transcription	Lung	lung
39	chr4:166130800-166132400	Enhancers	Primary B cells from cord blood	blood
40	chr4:166130800-166132400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr4:166130800-166133000	Active TSS	Brain Anterior Caudate	brain
42	chr4:166130800-166135400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr4:166130800-166135800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr4:166131200-166133000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr4:166131200-166142400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr4:166131200-166142600	Weak transcription	Psoas Muscle	Psoas
47	chr4:166131200-166143600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr4:166131400-166135400	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr4:166131400-166148600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr4:166131600-166132400	Enhancers	Muscle Satellite Cultured Cells	--

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