Variant report

Variant	rs1419432
Chromosome Location	chr7:127177299-127177300
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127175808..127177378-chr7:127224240..127225799,2	K562	blood:
2	chr7:127176513..127179338-chr7:127180427..127183117,2	K562	blood:
3	chr7:127176220..127178504-chr7:127190769..127192597,2	K562	blood:

Variant related genes	Relation type
ENSG00000179562	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10487493	1.00[EUR][1000 genomes]
rs2233578	1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127176000-127177400	Bivalent Enhancer	Fetal Brain Male	brain
2	chr7:127176600-127177400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr7:127176600-127177400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
4	chr7:127176600-127177400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
5	chr7:127176600-127177400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr7:127176600-127177400	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr7:127176600-127177600	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr7:127176800-127177400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:127176800-127177400	Enhancers	Liver	Liver
10	chr7:127176800-127177400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:127176800-127177400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
12	chr7:127176800-127177400	Bivalent Enhancer	Fetal Stomach	stomach
13	chr7:127176800-127177400	Bivalent/Poised TSS	NHEK	skin
14	chr7:127177000-127177400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:127177000-127177400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:127177000-127177400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
17	chr7:127177000-127177400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
18	chr7:127177000-127177400	Bivalent Enhancer	NH-A	brain
19	chr7:127177200-127177400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:127177200-127177400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
21	chr7:127177200-127177400	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:127177200-127177400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
23	chr7:127177200-127177400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr7:127177200-127177400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr7:127177200-127177400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
26	chr7:127177200-127177400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:127177200-127177400	Active TSS	Brain Angular Gyrus	brain
28	chr7:127177200-127177400	Enhancers	Brain Anterior Caudate	brain
29	chr7:127177200-127177400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
30	chr7:127177200-127177400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
31	chr7:127177200-127177400	Flanking Bivalent TSS/Enh	Fetal Lung	lung
32	chr7:127177200-127177600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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