Variant report

Variant	rs141995820
Chromosome Location	chrX:6058424-6058425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526949	chrX:5883977-6084630	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv949481	chrX:5883977-6401143	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv918106	chrX:5970935-6074792	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv533221	chrX:5970948-6352423	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv948484	chrX:6057749-6401143	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:6048600-6069000	Strong transcription	Dnd41	blood
2	chrX:6049600-6060800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chrX:6049800-6067000	Weak transcription	Fetal Brain Female	brain
4	chrX:6050400-6072200	Weak transcription	Brain Germinal Matrix	brain
5	chrX:6054800-6080000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chrX:6055000-6067000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chrX:6055000-6077800	Weak transcription	Ovary	ovary
8	chrX:6055200-6069000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chrX:6055400-6065400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chrX:6055400-6068600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chrX:6055400-6069000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chrX:6055600-6059000	Weak transcription	Fetal Thymus	thymus
13	chrX:6055600-6066800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chrX:6055600-6077600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chrX:6055800-6065200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chrX:6057200-6059200	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chrX:6058200-6058800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chrX:6058200-6059400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chrX:6058400-6064200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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