Variant report

Variant	rs142016689
Chromosome Location	chr6:163814687-163814688
allele	-/TA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1791729	chr6:163814557-163836689	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv338704	chr6:163814688-163814689	Weak transcription Enhancers	n/a	n/a	n/a	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163808000-163817000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr6:163808600-163817600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:163809400-163815000	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:163809800-163819800	Weak transcription	Spleen	Spleen
5	chr6:163809800-163825600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:163811000-163817400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr6:163812200-163815000	Weak transcription	Placenta	Placenta
8	chr6:163812600-163816600	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr6:163812600-163817400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:163812800-163815400	Enhancers	Adipose Nuclei	Adipose
11	chr6:163813000-163816000	Enhancers	Left Ventricle	heart
12	chr6:163813200-163815600	Enhancers	HUVEC	blood vessel
13	chr6:163813200-163817200	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:163813200-163817600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:163813400-163816600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:163813400-163817600	Weak transcription	Right Atrium	heart
17	chr6:163813800-163816600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:163813800-163816600	Weak transcription	Brain Germinal Matrix	brain
19	chr6:163813800-163817600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:163813800-163817600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:163813800-163817600	Weak transcription	NHDF-Ad	bronchial
22	chr6:163813800-163817800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:163813800-163818000	Weak transcription	Liver	Liver
24	chr6:163814000-163815000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:163814000-163815000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:163814000-163815000	Weak transcription	Brain Anterior Caudate	brain
27	chr6:163814000-163815000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr6:163814000-163815000	Weak transcription	Brain Hippocampus Middle	brain
29	chr6:163814000-163815000	Weak transcription	Fetal Heart	heart
30	chr6:163814000-163815200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:163814000-163815400	Enhancers	Hela-S3	cervix
32	chr6:163814000-163816200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:163814000-163816400	Weak transcription	Brain Angular Gyrus	brain
34	chr6:163814000-163817000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr6:163814000-163817200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:163814000-163817400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:163814000-163817400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:163814000-163817400	Weak transcription	Fetal Lung	lung
39	chr6:163814000-163817400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr6:163814000-163817400	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr6:163814000-163817400	Weak transcription	NH-A	brain
42	chr6:163814000-163817600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr6:163814000-163817600	Weak transcription	Primary hematopoietic stem cells	blood
44	chr6:163814000-163817600	Weak transcription	Psoas Muscle	Psoas
45	chr6:163814000-163817600	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr6:163814000-163817800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:163814000-163817800	Weak transcription	HSMM	muscle
48	chr6:163814000-163817800	Weak transcription	NHLF	lung
49	chr6:163814200-163815200	Enhancers	NHEK	skin
50	chr6:163814200-163815400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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