Variant report

Variant	rs142025901
Chromosome Location	chr5:74161076-74161077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:74160377-74163048	HepG2	liver:	n/a	n/a
2	JUND	chr5:74160766-74161080	HepG2	liver:	n/a	n/a
3	POLR2A	chr5:74161026-74163038	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr5:74160806-74162477	MCF10A-Er-Src	breast:	n/a	n/a
5	CEBPB	chr5:74160706-74161130	HepG2	liver:	n/a	chr5:74160930-74160941 chr5:74160890-74160901
6	HDAC2	chr5:74160705-74161091	HepG2	liver:	n/a	n/a
7	CEBPB	chr5:74160726-74161091	HepG2	liver:	n/a	chr5:74160930-74160941 chr5:74160890-74160901
8	MBD4	chr5:74160507-74161108	HepG2	liver:	n/a	n/a
9	CEBPB	chr5:74160717-74161164	MCF-7	breast:	n/a	chr5:74160930-74160941 chr5:74160890-74160901
10	MYBL2	chr5:74160594-74161184	HepG2	liver:	n/a	n/a
11	POLR2A	chr5:74160759-74163043	HepG2	liver:	n/a	n/a
12	EP300	chr5:74160676-74161098	HepG2	liver:	n/a	n/a
13	CEBPB	chr5:74160738-74161102	H1-hESC	embryonic stem cell:	n/a	chr5:74160930-74160941 chr5:74160890-74160901
14	SMC3	chr5:74160673-74161461	HepG2	liver:	n/a	n/a
15	ZNF263	chr5:74160620-74162789	HEK293-T-REx	kidney:	n/a	n/a
16	REST	chr5:74160888-74163163	H1-neurons	neurons:	n/a	chr5:74161964-74161977 chr5:74161838-74161851 chr5:74161891-74161909
17	JUN	chr5:74160792-74161081	HepG2	liver:	n/a	chr5:74160927-74160940
18	TEAD4	chr5:74160582-74161144	HepG2	liver:	n/a	n/a
19	POLR2A	chr5:74161045-74164158	H1-hESC	embryonic stem cell:	n/a	n/a
20	CREB1	chr5:74160647-74163073	HepG2	liver:	n/a	n/a
21	SIN3A	chr5:74160653-74163041	H1-hESC	embryonic stem cell:	n/a	n/a
22	CEBPB	chr5:74160621-74161159	MCF-7	breast:	n/a	chr5:74160930-74160941 chr5:74160890-74160901
23	POLR2A	chr5:74161066-74163056	H1-neurons	neurons:	n/a	n/a
24	MBD4	chr5:74160663-74161501	HepG2	liver:	n/a	n/a
25	CHD1	chr5:74160489-74163268	H1-hESC	embryonic stem cell:	n/a	chr5:74162137-74162147 chr5:74162977-74162984
26	POLR2A	chr5:74160249-74161841	HepG2	liver:	n/a	n/a
27	CEBPB	chr5:74160744-74161091	A549	lung:	n/a	chr5:74160930-74160941 chr5:74160890-74160901
28	TAF7	chr5:74160994-74162960	H1-hESC	embryonic stem cell:	n/a	n/a
29	KAP1	chr5:74160385-74161861	HEK293	kidney:	n/a	n/a
30	NFIC	chr5:74160667-74161110	HepG2	liver:	n/a	n/a
31	CEBPB	chr5:74160803-74161112	ECC-1	luminal epithelium:	n/a	chr5:74160930-74160941 chr5:74160890-74160901
32	HEY1	chr5:74160345-74163102	HepG2	liver:	n/a	chr5:74161997-74162012 chr5:74162243-74162258 chr5:74162276-74162291 chr5:74162345-74162360
33	MAX	chr5:74160584-74163163	HepG2	liver:	n/a	chr5:74162270-74162280 chr5:74162396-74162406
34	CEBPB	chr5:74160652-74161123	HepG2	liver:	n/a	chr5:74160930-74160941 chr5:74160890-74160901

Variant related genes	Relation type
ENSG00000271714	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3338870	chr5:74159996-74164294	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3502490	chr5:74160996-74163344	Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3502491	chr5:74160996-74163344	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74148200-74161200	Weak transcription	Right Atrium	heart
2	chr5:74158600-74163000	Active TSS	H1 Cell Line	embryonic stem cell
3	chr5:74158800-74163800	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr5:74159000-74162800	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr5:74159400-74163000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:74159400-74163000	Active TSS	H9 Cell Line	embryonic stem cell
7	chr5:74159400-74163800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr5:74159600-74162800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:74159800-74163000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:74160000-74162800	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr5:74160000-74163000	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr5:74160200-74162200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:74160200-74163000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:74160200-74163000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:74160400-74161400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:74160400-74161600	Bivalent/Poised TSS	HepG2	liver
17	chr5:74160400-74162800	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr5:74160400-74163000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:74160400-74163000	Active TSS	Brain Angular Gyrus	brain
20	chr5:74160400-74163200	Active TSS	Brain Cingulate Gyrus	brain
21	chr5:74160600-74161200	Enhancers	Primary T cells fromperipheralblood	blood
22	chr5:74160600-74161200	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr5:74160600-74161200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr5:74160600-74161600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
25	chr5:74160600-74161600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr5:74160600-74161600	Flanking Active TSS	Dnd41	blood
27	chr5:74160600-74162600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:74160600-74163000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr5:74160600-74163000	Active TSS	Fetal Kidney	kidney
30	chr5:74160600-74163000	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr5:74160800-74161200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
32	chr5:74160800-74161200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr5:74160800-74161200	Active TSS	Fetal Brain Female	brain
34	chr5:74160800-74161400	Flanking Active TSS	Brain Hippocampus Middle	brain
35	chr5:74160800-74161400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
36	chr5:74160800-74161400	Bivalent Enhancer	Small Intestine	intestine
37	chr5:74160800-74161400	Flanking Active TSS	A549	lung
38	chr5:74160800-74161600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr5:74160800-74161600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
40	chr5:74160800-74161600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr5:74160800-74161600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr5:74160800-74162600	Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr5:74160800-74162800	Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr5:74160800-74162800	Active TSS	Brain Substantia Nigra	brain
45	chr5:74160800-74163000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr5:74160800-74163000	Active TSS	iPS-15b Cell Line	embryonic stem cell
47	chr5:74160800-74163000	Active TSS	Brain Anterior Caudate	brain
48	chr5:74161000-74161200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr5:74161000-74161200	Active TSS	Primary T cells from cord blood	blood
50	chr5:74161000-74161200	Active TSS	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links