Variant report

Variant	rs1420359
Chromosome Location	chr2:67265207-67265208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13402562	1.00[CHB][hapmap]
rs1420360	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17032925	1.00[CHB][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67262600-67265600	Enhancers	Fetal Lung	lung
2	chr2:67264000-67266600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr2:67264200-67265400	Enhancers	Fetal Kidney	kidney
4	chr2:67264200-67267400	Enhancers	Fetal Intestine Small	intestine
5	chr2:67264600-67266000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr2:67264600-67267400	Enhancers	Fetal Intestine Large	intestine
7	chr2:67264800-67265400	Flanking Active TSS	Liver	Liver
8	chr2:67264800-67266000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr2:67264800-67268200	Enhancers	Duodenum Mucosa	Duodenum
10	chr2:67265000-67266000	Weak transcription	Small Intestine	intestine
11	chr2:67265000-67266200	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr2:67265200-67265400	Flanking Active TSS	Stomach Mucosa	stomach
13	chr2:67265200-67267200	Enhancers	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links