Variant report

Variant	rs142046165
Chromosome Location	chr2:152692257-152692258
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:152689042..152691234-chr2:152692225..152695696,3	K562	blood:
2	chr2:152684180..152686852-chr2:152690162..152693530,4	MCF-7	breast:
3	chr2:152664790..152667573-chr2:152691084..152693387,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162980	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005746	chr2:152361972-153059840	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv535984	chr2:152361972-153059840	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	esv3693431	chr2:152683731-152981827	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv1010582	chr2:152692238-152701782	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152685400-152697200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:152685600-152694600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:152685600-152695200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:152685600-152697600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:152685600-152699400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:152685600-152709600	Weak transcription	Fetal Brain Female	brain
7	chr2:152685800-152695200	Weak transcription	Brain Anterior Caudate	brain
8	chr2:152685800-152695600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr2:152685800-152697400	Weak transcription	Fetal Muscle Leg	muscle
10	chr2:152685800-152699200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr2:152685800-152699400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr2:152685800-152702200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:152687600-152696600	Weak transcription	Fetal Intestine Small	intestine
14	chr2:152688000-152697600	Weak transcription	HepG2	liver
15	chr2:152690000-152692400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr2:152691600-152694400	Weak transcription	Brain Substantia Nigra	brain
17	chr2:152691800-152692400	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr2:152692000-152692400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr2:152692000-152692400	Enhancers	Primary T cells from cord blood	blood
20	chr2:152692000-152692400	Enhancers	Primary hematopoietic stem cells	blood
21	chr2:152692000-152692400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr2:152692200-152692400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr2:152692200-152695400	Weak transcription	GM12878-XiMat	blood

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