Variant report

Variant	rs142050058
Chromosome Location	chr10:53828701-53828702
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2750961	chr10:53726294-54010594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1040754	chr10:53758289-53845925	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv550873	chr10:53811431-53838761	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv550874	chr10:53816171-53841105	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
7	esv3494300	chr10:53828612-53828848	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
8	esv3432771	chr10:53828672-53828831	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
9	esv3494302	chr10:53828684-53828782	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53814400-53842800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:53817400-53830000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:53824000-53838200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:53824200-53830200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:53824200-53835200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:53824400-53846200	Weak transcription	Aorta	Aorta
7	chr10:53824800-53831000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:53824800-53833000	Weak transcription	Psoas Muscle	Psoas
9	chr10:53825200-53830600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:53828600-53828800	Enhancers	Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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