The 2.0 version of rSNPBase

Variant report

Variant rs142055331
Chromosome Location chr1:172420915-172420916
allele -/ATC
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172413600-172421800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
2 chr1:172413600-172421800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
3 chr1:172417200-172421800 Weak transcription Psoas Muscle Psoas
4 chr1:172417200-172423200 Enhancers Pancreatic Islets Pancreatic Islet
5 chr1:172418000-172422200 Enhancers NH-A brain
6 chr1:172419400-172422200 Weak transcription Brain Substantia Nigra brain
7 chr1:172419600-172421400 Weak transcription Brain Hippocampus Middle brain
8 chr1:172419600-172421600 Weak transcription Skeletal Muscle Male skeletal muscle
9 chr1:172419600-172422000 Weak transcription Right Ventricle heart
10 chr1:172419600-172423200 Enhancers K562 blood
11 chr1:172419600-172426000 Enhancers Fetal Intestine Large intestine
12 chr1:172419800-172421400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr1:172419800-172421400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr1:172419800-172421400 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr1:172419800-172424400 Weak transcription Primary monocytes fromperipheralblood blood
16 chr1:172420000-172421600 Weak transcription Gastric stomach
17 chr1:172420000-172421800 Weak transcription Fetal Muscle Trunk muscle
18 chr1:172420200-172421600 Weak transcription Right Atrium heart
19 chr1:172420200-172426000 Enhancers Fetal Intestine Small intestine
20 chr1:172420400-172421400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
21 chr1:172420400-172421400 Weak transcription Fetal Muscle Leg muscle
22 chr1:172420400-172421400 Weak transcription Stomach Mucosa stomach
23 chr1:172420400-172421400 Weak transcription HSMMtube muscle
24 chr1:172420400-172421600 Weak transcription Esophagus oesophagus
25 chr1:172420400-172421600 Weak transcription Left Ventricle heart
26 chr1:172420400-172421600 Weak transcription Pancreas Pancrea
27 chr1:172420400-172421800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr1:172420400-172421800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr1:172420400-172421800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr1:172420400-172421800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
31 chr1:172420400-172422000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr1:172420400-172422400 Enhancers Hela-S3 cervix
33 chr1:172420400-172422800 Weak transcription Primary neutrophils fromperipheralblood blood
34 chr1:172420400-172425400 Weak transcription Duodenum Mucosa Duodenum
35 chr1:172420600-172421000 Weak transcription Fetal Adrenal Gland Adrenal Gland
36 chr1:172420600-172421600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
37 chr1:172420600-172421600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
38 chr1:172420600-172421600 Weak transcription Placenta Placenta
39 chr1:172420600-172421600 Weak transcription Placenta Amnion Placenta Amnion
40 chr1:172420600-172421800 Weak transcription Muscle Satellite Cultured Cells --
41 chr1:172420600-172422800 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr1:172420800-172421200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr1:172420800-172421200 Weak transcription Fetal Heart heart
44 chr1:172420800-172421200 Weak transcription A549 lung
45 chr1:172420800-172422800 Enhancers HepG2 liver

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Last update: Aug 31, 2015