Variant report

Variant	rs142067036
Chromosome Location	chr15:83875085-83875086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83834964..83840588-chr15:83874121..83878306,6	MCF-7	breast:
2	chr15:83733142..83737236-chr15:83872525..83879828,15	MCF-7	breast:
3	chr15:83678154..83684518-chr15:83871554..83879371,12	MCF-7	breast:
4	chr15:83652926..83655970-chr15:83874776..83878125,3	MCF-7	breast:
5	chr15:83678260..83683197-chr15:83874959..83878158,5	K562	blood:
6	chr15:83797822..83799422-chr15:83873732..83875902,2	K562	blood:
7	chr15:83733297..83738085-chr15:83874642..83880991,12	MCF-7	breast:
8	chr15:83874825..83876698-chr15:84113780..84116489,2	MCF-7	breast:
9	chr15:83733314..83737988-chr15:83872344..83875458,5	K562	blood:
10	chr15:83826728..83828298-chr15:83873729..83876383,2	MCF-7	breast:
11	chr15:83678614..83685168-chr15:83874398..83879059,12	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000169612	Chromatin interaction
ENSG00000103942	Chromatin interaction
ENSG00000249214	Chromatin interaction
ENSG00000169609	Chromatin interaction
ENSG00000260608	Chromatin interaction
ENSG00000140600	Chromatin interaction
ENSG00000166503	Chromatin interaction
ENSG00000263643	Chromatin interaction
ENSG00000064726	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3357133	chr15:83874773-83877521	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83862800-83875200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:83870600-83875400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:83872000-83877200	Active TSS	GM12878-XiMat	blood
4	chr15:83873400-83875400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:83873400-83877600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:83873600-83877000	Active TSS	Stomach Smooth Muscle	stomach
7	chr15:83873800-83875200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:83873800-83875200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:83873800-83875200	Weak transcription	Left Ventricle	heart
10	chr15:83873800-83875400	Weak transcription	Pancreas	Pancrea
11	chr15:83874000-83877200	Active TSS	H1 Cell Line	embryonic stem cell
12	chr15:83874000-83877400	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr15:83874200-83875200	Active TSS	K562	blood
14	chr15:83874200-83875400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:83874200-83875400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr15:83874200-83875600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:83874200-83877200	Active TSS	Aorta	Aorta
18	chr15:83874200-83877400	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr15:83874400-83875200	Flanking Active TSS	Dnd41	blood
20	chr15:83874400-83875400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
21	chr15:83874400-83875400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr15:83874400-83875400	Flanking Active TSS	NHEK	skin
23	chr15:83874400-83875400	Flanking Active TSS	Osteobl	bone
24	chr15:83874400-83875600	Active TSS	Brain Germinal Matrix	brain
25	chr15:83874400-83875800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr15:83874400-83877600	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr15:83874600-83875200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr15:83874600-83875200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr15:83874600-83875200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:83874600-83875200	Flanking Active TSS	Fetal Stomach	stomach
31	chr15:83874600-83875200	Flanking Active TSS	HSMM	muscle
32	chr15:83874600-83875400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
33	chr15:83874600-83875400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
34	chr15:83874600-83875400	Flanking Active TSS	Brain Hippocampus Middle	brain
35	chr15:83874600-83875600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:83874600-83875600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr15:83874600-83875600	Flanking Active TSS	Brain Cingulate Gyrus	brain
38	chr15:83874600-83876000	Active TSS	Right Atrium	heart
39	chr15:83874600-83877000	Active TSS	Fetal Muscle Leg	muscle
40	chr15:83874600-83877200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr15:83874600-83877400	Active TSS	H9 Cell Line	embryonic stem cell
42	chr15:83874600-83877400	Active TSS	Brain Anterior Caudate	brain
43	chr15:83874600-83877600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr15:83874600-83877800	Active TSS	Fetal Brain Female	brain
45	chr15:83874800-83875200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr15:83874800-83875200	Bivalent Enhancer	Duodenum Mucosa	Duodenum
47	chr15:83874800-83875200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr15:83874800-83875400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
49	chr15:83874800-83875400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
50	chr15:83874800-83875400	Flanking Active TSS	Hela-S3	cervix

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